Browse Element(s) Details


Os.49193.1.S1_at

Description gb:AK059324.1
DB_XREF= gi:32969342
TID=Os.49193.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H11, full insert sequence.
FL= gb:AK059324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3227011/11AP2 domain transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32220Os.12053.1.S1_at11/115+18706496..1871063050S ribosomal protein L1, putative, expressed
LOC_Os05g32230Os.7439.1.S1_at11/115+18713295..18718949expressed protein
LOC_Os05g32240NANA5+18719305..18719631hypothetical protein
LOC_Os05g32250OsAffx.6425.1.S1_at1/115+18721123..18724096hypothetical protein
LOC_Os05g32260NANA5+18725711..18725992hypothetical protein
LOC_Os05g32270Os.49193.1.S1_at11/115+18730328..18734550AP2 domain transcription factor, putative, expressed
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32300OsAffx.30227.2.S1_at11/115+18747126..18747926hypothetical protein
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006109biological_processregulation of carbohydrate metabolism
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008610biological_processlipid biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49193.1.S1_at--9--6991Chr05:18733127..18733151 (25 bp)
GTACCTGCAACTGGACATGACACAA
LOC_Os05g32270
Os.49193.1.S1_at--935--71Chr05:18733204..18733228 (25 bp)
ATTGCCCTCTGTTACTGCACAAATG
LOC_Os05g32270
Os.49193.1.S1_at--508--5531Chr05:18733228..18733252 (25 bp)
GAAAAATACCTGGAACCCTGCTGAT
LOC_Os05g32270
Os.49193.1.S1_at--1028--5171Chr05:18733295..18733319 (25 bp)
GCAAGTCAACCTGTCACGATGGCAA
LOC_Os05g32270
Os.49193.1.S1_at--265--2791Chr05:18733478..18733502 (25 bp)
AAGAGTGACCGTACGAGCTTACCAA
LOC_Os05g32270
Os.49193.1.S1_at--252--351Chr05:18734262..18734286 (25 bp)
ATAACATCCTGCACGTCTATGGGTT
LOC_Os05g32270
Os.49193.1.S1_at--332--10111Chr05:18734279..18734303 (25 bp)
TATGGGTTTCCTTCTTCCTAGCTTT
LOC_Os05g32270
Os.49193.1.S1_at--933--9231Chr05:18734294..18734318 (25 bp)
TCCTAGCTTTTGAGGTGACCCGTGA
LOC_Os05g32270
Os.49193.1.S1_at--424--4291Chr05:18734411..18734435 (25 bp)
CCTAGTGCCCCGTTAATGATATTTA
LOC_Os05g32270
Os.49193.1.S1_at--683--5891Chr05:18734442..18734466 (25 bp)
GAGCTGTCTGTACATATCGCGGTTC
LOC_Os05g32270
Os.49193.1.S1_at--457--531Chr05:18734457..18734481 (25 bp)
ATCGCGGTTCTTATTTCAGCTACTT
LOC_Os05g32270
Target Sequence 
GTACCTGCAACTGGACATGACACAACTGCAGTTAACATGAACGTGAATGGGTTGCTTGTGCAAAGAGCTCCATACACATT
GCCCTCTGTTACTGCACAAATGAAAAATACCTGGAACCCTGCTGATCCTTCTGCGGACCCTCTTTTCTGGACCAACTTCA
TCCTGCCAGCAAGTCAACCTGTCACGATGGCAACAATAGCAACAACAACGTTTGCAAAGAATGAGGTGAGTTCAAGTGAT
CCATTCCATGGTCAAGAGTGACCGTACGAGCTTACCAAAGTGCATGCAGGATTTGCTTTTTGGCTTGGTGGGTGATAACA
TCCTGCACGTCTATGGGTTTCCTTCTTCCTAGCTTTTGAGGTGACCCGTGAACAAATACCCTTTGTATCCATAGTTCATA
AGCCATGAATAGAAGGTAAGAGAAGTNCANCCATAGTTATGTAATATATACAGTGCCTAGTGGCCTAGTGCCCCGTTAAT
GATATTTAGTTATAGAGCTGTCTGTACATATCGCGGTTCTTATTTCAGCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis