Browse Element(s) Details


Os.49200.1.S1_at

Description gb:AK063956.1
DB_XREF= gi:32973974
TID=Os.49200.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G01, full insert sequence.
FL= gb:AK101250.1 gb:AK063956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3260010/11Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49200.1.S1_at--145--1971NONE
ACTGATCCCAGTCACGATAGCTGCA
NONE
Os.49200.1.S1_at--222--4751Chr07:19440746..19440770 (25 bp)
GCTGTTGAGCAACGTCACCAAATCT
LOC_Os07g32600
Os.49200.1.S1_at--555--2411Chr07:19440779..19440803 (25 bp)
AAACACAACCACTGCGCAGACGAGT
LOC_Os07g32600
Os.49200.1.S1_at--598--1071Chr07:19440843..19440867 (25 bp)
AGGGAGACAGGGTTCTTGTTCATCC
LOC_Os07g32600
Os.49200.1.S1_at--79--9552Chr07:19440856..19440880 (25 bp)
TCTTGTTCATCCTCCGGTGGTTGTT
LOC_Os07g32600
Os.49200.1.S1_at--274--9291Chr07:19440868..19440892 (25 bp)
TCCGGTGGTTGTTGAGCTTGTCAGT
LOC_Os07g32600
Os.49200.1.S1_at--76--10811Chr07:19440885..19440909 (25 bp)
TTGTCAGTGGTGCTTATCACGACGA
LOC_Os07g32600
Os.49200.1.S1_at--495--11Chr07:19440900..19440924 (25 bp)
ATCACGACGAATTCAAACTTTTGGA
LOC_Os07g32600
Os.49200.1.S1_at--256--2971Chr07:19440954..19440978 (25 bp)
AATGGAATTTTTGGGATGACACTTT
LOC_Os07g32600
Os.49200.1.S1_at--971--6311Chr07:19440968..19440992 (25 bp)
GATGACACTTTAGAGGAGCAGGCAG
LOC_Os07g32600
Os.49200.1.S1_at--786--7571Chr07:19440993..19441017 (25 bp)
GGGCTGTATGTTTAGTGATTCTTTA
LOC_Os07g32600
Target Sequence 
ACTGATCCCAGTCACGATAGCTGCATCTTTCCAGGAAGCAAGCTGTTGAGCAACGTCACCAAATCTGACGGGGCAAACAC
AACCACTGCGCAGACGAGTGATGCAGAGGGCTCTGCAATATGGAGNCTAAGAACTGGAAGGGAGACAGGGTTCTTGTTCA
TCCTCCGGTGGTTGTTGAGCTTGTCAGTGGTGCTTATCACGACGAATTCAAACTTTTGGACATGACAAGAGCATGTAGAT
TGTAACAAAAATGGAATTTTTGGGATGACACTTTAGAGGAGCAGGCAGGGGCTGTATGTTTAGTGATTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis