Browse Element(s) Details


Os.49305.1.S1_at

Description gb:AK120130.1
DB_XREF= gi:37989753
TID=Os.49305.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026O21, full insert sequence.
FL= gb:AK120130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5175411/11Alpha amylase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49305.1.S1_at--1132--2231Chr01:30092659..30092683 (25 bp)
AAATATTTATATGTCGCTTGAGGCA
LOC_Os01g51754
Os.49305.1.S1_at--692--2011Chr01:30092694..30092718 (25 bp)
ACTATGATGCATGGATACGCGATAC
LOC_Os01g51754
Os.49305.1.S1_at--500--10211Chr01:30092847..30092871 (25 bp)
TATTCTATGAATTGTTGCCTGTTAC
LOC_Os01g51754
Os.49305.1.S1_at--1124--10831Chr01:30092950..30092974 (25 bp)
TTGGGTCTTTAATGTGCTATTGAAC
LOC_Os01g51754
Os.49305.1.S1_at--516--3192Chr01:30092974..30092998 (25 bp)
CAAGGAGGTTACACTGCTAGGTATC
LOC_Os01g51754
Os.49305.1.S1_at--772--8771Chr01:30093059..30093083 (25 bp)
TGTTTAATGACCGATACTCCTCCGA
LOC_Os01g51754
Os.49305.1.S1_at--912--5631Chr01:30093093..30093117 (25 bp)
GACAGAGTATCGGACGTATCGCCGT
LOC_Os01g51754
Os.49305.1.S1_at--490--6892Chr07:5801961..5801996 (25 bp)
GTATCGCCGTATCGGATACCGGTAC
NONE
Os.49305.1.S1_at--453--5331Chr01:30093144..30093168 (25 bp)
GAAGTATCGGTGCATCATAGCTTGT
LOC_Os01g51754
Os.49305.1.S1_at--358--1431Chr01:30093171..30093195 (25 bp)
AGAAAACTGGCTCTCATCCTACTTG
LOC_Os01g51754
Os.49305.1.S1_at--259--571Chr01:30093186..30093210 (25 bp)
ATCCTACTTGATTTTGACTACCCTT
LOC_Os01g51754
Target Sequence 
AAATATTTATATGTCGCTTGAGGCANCACTTGNCCACTATGATGCATGGATACGCGATACTGGTANGGCGATACGAGATT
TTTTAAAAAACATCAATACGNNGATACGGNGAGTATATATAAAAATATGTTTAAAAATAAAATATAGGGAACTACAAAAG
GGTAAAGCAATAAGATTATCTTAAAATATATTCTATGAATTGTTGCCTGTTACAAAAAATATAGCAAATATAGCCTTGTA
TTACAAATATAGCAAGTATATTAAAGTTATAAATATATCAGAAGTATAGCATTGGGTCTTTAATGTGCTATTGAACAAGG
AGGTTACACTGCTAGGTATCAAAGAAGTATCTGATAAGTATCGTGTGAGTATCGGTATTTATTTTTTCTTTTTTTTCCAT
TGTTTAATGACCGATACTCCTCCGATACCGTATCGACAGAGTATCGGACGTATCGCCGTATCGGATACCGGTACGGCAAG
AAATTGAAGTATCGGTGCATCATAGCTTGTCCAGAAAACTGGCTCTCATCCTACTTGATTTTGACTACCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis