Browse Element(s) Details


Os.49324.1.S1_at

Description gb:AK121009.1
DB_XREF= gi:37990632
TID=Os.49324.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047B10, full insert sequence.
FL= gb:AK121009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4435411/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49324.1.S1_at--659--5391Chr04:26045266..26045290 (25 bp)
GAAGCATAATAGTACTCCACTCCCT
LOC_Os04g44354
Os.49324.1.S1_at--496--331Chr04:26045224..26045248 (25 bp)
ATACAGGATCTGACGCATACTATAA
LOC_Os04g44354
Os.49324.1.S1_at--458--2771Chr04:26044976..26045000 (25 bp)
AAGAGTTGACTTCTCTCTTTCGGCA
LOC_Os04g44354
Os.49324.1.S1_at--631--9551Chr04:26044961..26044985 (25 bp)
TCTTTCGGCAGACCACATCACATGT
LOC_Os04g44354
Os.49324.1.S1_at--201--391Chr04:26044945..26044969 (25 bp)
ATCACATGTGATTGGTTCTCTCTTC
LOC_Os04g44354
Os.49324.1.S1_at--831--9511Chr04:26044927..26044951 (25 bp)
TCTCTTCCTTCCATAATGCAGTACT
LOC_Os04g44354
Os.49324.1.S1_at--231--9031Chr04:26044911..26044935 (25 bp)
TGCAGTACTTCCAACATCCAAAGGG
LOC_Os04g44354
Os.49324.1.S1_at--21--2771Chr04:26044866..26044890 (25 bp)
AAGACTTGGTTCATCTGCACATAAA
LOC_Os04g44354
Os.49324.1.S1_at--23--10451Chr04:26044833..26044857 (25 bp)
TTAGGAGTACTATCAGCCCTGAGAA
LOC_Os04g44354
Os.49324.1.S1_at--641--1151Chr04:26044795..26044819 (25 bp)
AGTCTAGAAGACCTCGATTTTCCTT
LOC_Os04g44354
Os.49324.1.S1_at--464--6011Chr04:26044724..26044748 (25 bp)
GAGAGTATTGACACCAGTCCCAAAG
LOC_Os04g44354
Target Sequence 
GAAGCATAATAGTACTCCACTCCCTTTTGTTAAAAAAAAAACATACAGGATCTGACGCATACTATAATACTATGAGAATT
TAGACATGAGGCATATCTCATACTATTTTTTTTAACAAAAGGAGTAAACCCTCTTTAAAAAAACAATTAAATCTTGTTAA
GAATATGGACATGTGCTTGAATCTGCACAAGCATATGTTTAGATTCATAGTTATAATTTAAAATTTTCTAGGATAGAAGA
AATAACTGTGGGGTATTTTTAGCTCAATTTTGAACTAGGCGAGATCTCACAAGAGTTGACTTCTCTCTTTCGGCAGACCA
CATCACATGTGATTGGTTCTCTCTTCCTTCCATAATGCAGTACTTCCAACATCCAAAGGGGATAATAATAACAAATGATT
AAGACTTGGTTCATCTGCACATAAAAAAGAATATTAGGAGTACTATCAGCCCTGAGAAAAATATGGGCCAGAGTCTAGAA
GACCTCGATTTTCCTTCTCTTTTTTTTTTAAAAAAAAAAACTCTCCATTTGATTGACAAAGGAGAGAGTATTGACACCAG
TCCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis