Browse Element(s) Details


Os.49416.1.S1_at

Description gb:AK073218.1
DB_XREF= gi:32983241
TID=Os.49416.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033014F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033014F21, full insert sequence.
FL= gb:AK073218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3125410/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31190NANA5+18064936..18065560expressed protein
LOC_Os05g31200OsAffx.27099.1.S1_at10/115+18066640..18069272hypothetical protein
LOC_Os05g31210Os.45957.4.S1_x_at8/115+18069483..18073584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31220Os.52749.1.S1_at6/115+18077106..18079883Cell division control protein 48 homolog B, putative
LOC_Os05g31230Os.17230.1.S1_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17230.1.S2_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17183.1.A1_s_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31280Os.54789.1.S1_at10/115+18102682..18104050Gibberellin regulated protein, expressed
LOC_Os05g31290OsAffx.4487.1.S1_at11/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31290OsAffx.27100.1.S1_at10/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31300NANA5+18116949..18118275transposon protein, putative, Mariner sub-class
LOC_Os05g31310OsAffx.4488.1.S1_at11/115+18119606..18120087hypothetical protein
LOC_Os05g31310OsAffx.31273.1.S1_x_at1/115+18119606..18120087hypothetical protein
LOC_Os05g31320OsAffx.27101.1.S1_at10/115+18121933..18124518hypothetical protein
LOC_Os05g31320OsAffx.30485.1.S1_at1/115+18121933..18124518hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49416.1.S1_at--264--6031Chr05:18090361..18090385 (25 bp)
GAGAGGCCTTGCTCATTATTTTCTG
LOC_Os05g31254
Os.49416.1.S1_at--805--8311Chr05:18090337..18090361 (25 bp)
GGCTACACTTTCTGTCTGACGAAGA
LOC_Os05g31254
Os.49416.1.S1_at--978--9731Chr05:18090297..18090321 (25 bp)
TCAATGTTCTCTCTCGCATCATTAA
LOC_Os05g31254
Os.49416.1.S1_at--77--4971Chr05:18090282..18090306 (25 bp)
GCATCATTAAATCTTCTGGTGGCAA
LOC_Os05g31254
Os.49416.1.S1_at--529--7991Chr05:18089635..18089659 (25 bp)
GGATGACATAACTCAGCCCTTGAAG
LOC_Os05g31254
Os.49416.1.S1_at--410--5371Chr05:18089614..18089638 (25 bp)
GAAGACAATCTTCTTAGCGTGTGAA
LOC_Os05g31254
Os.49416.1.S1_at--26--2091Chr05:18089544..18089568 (25 bp)
ACATTCAGCGGTGAGTGGTTCTTGA
LOC_Os05g31254
Os.49416.1.S1_at--1094--8571Chr05:18089529..18089553 (25 bp)
TGGTTCTTGAGCTGTGTCATGACAC
LOC_Os05g31254
Os.49416.1.S1_at--393--5251Chr05:18089472..18089496 (25 bp)
GAATCTCTCTGATAGTAGGCCTGTA
LOC_Os05g31254
Os.49416.1.S1_at--202--1411NONE
AGACTTCATCCTAACTGATACCTCG
NONE
Os.49416.1.S1_at--587--9231Chr05:18089255..18089279 (25 bp)
TCTTAAGTTCTAACCGGGCTAATCT
LOC_Os05g31254
Target Sequence 
GAGAGGCCTTGCTCATTATTTTCTGGCTACACTTTCTGTCTGACGAAGAACATCCAGCCCTCCGTCAATGTTCTCTCTCG
CATCATTAAATCTTCTGGTGGCAAGCTCATCAATAAGCTGGATGACATAACTCAGCCCTTGAAGACAATCTTCTTAGCGT
GTGAAGAAGATATGGAACTTGCATTGGATGCTGCAAAAAGAGGCATCAAAACATTCAGCGGTGAGTGGTTCTTGAGCTGT
GTCATGACACAAGAGCTTGACCTTGAGGCCCCTCAGTTCACTGAATCTCTCTGATAGTAGGCCTGTAGTTTTAGTCAATA
CAGACTTCATCCTAACTGATACCTCGTTAGTTGGAACTGTAAATTATTCTTTTGGTATCTGAACGGTTAATGTTTATGTG
TAAATATGAACATTATATTTTTTTAGACCTCTATAAACTATCGAGCTATATTTATGCTCGGAAACTTTGGTGCAATTGTT
GTATGATTTGAATGAATATTCTTAAGTTCTAACCGGGCTAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis