Browse Element(s) Details


Os.49429.1.S1_at

Description gb:AK064178.1
DB_XREF= gi:32974196
TID=Os.49429.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B01, full insert sequence.
FL= gb:AK064178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0123011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed
LOC_Os06g01270OsAffx.15210.1.S1_at11/116+177343..177894hypothetical protein
LOC_Os06g01280OsAffx.15211.1.S1_at11/116+179215..180423hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49429.1.S1_at--88--7971Chr06:153722..153746 (25 bp)
GGATCATGCTGTAACACTCGCAATT
LOC_Os06g01230
Os.49429.1.S1_at--1116--1871Chr06:153602..153625 (24 bp)
ACGATGCAGCCTCCCAGATTATGGA
LOC_Os06g01230
Os.49429.1.S1_at--601--1331Chr06:153478..153502 (25 bp)
AGAGGATACCCCTATTCAAGTGGAT
LOC_Os06g01230
Os.49429.1.S1_at--61--6631Chr06:152743..152767 (25 bp)
GTTGGTACATGCTAATCAGCCCCGT
LOC_Os06g01230
Os.49429.1.S1_at--615--351Chr06:152729..152753 (25 bp)
ATCAGCCCCGTGGAACTAATCTAAA
LOC_Os06g01230
Os.49429.1.S1_at--308--3091Chr06:152664..152688 (25 bp)
AATAATGTACCTTCGTTGGAGACAC
LOC_Os06g01230
Os.49429.1.S1_at--106--5971Chr06:152639..152663 (25 bp)
GAGAACAGCAGCATGCACCTCATAT
LOC_Os06g01230
Os.49429.1.S1_at--405--1091Chr06:152570..152594 (25 bp)
AGTGGCCGGCTCTCTTTGTGATGGC
LOC_Os06g01230
Os.49429.1.S1_at--54--2271Chr06:152514..152538 (25 bp)
AAATCTCTGAATCACACTACCTGAC
LOC_Os06g01230
Os.49429.1.S1_at--385--3671Chr06:152470..152494 (25 bp)
CTTAGCTTAAGCTTGGGAGCCTCAT
LOC_Os06g01230
Os.49429.1.S1_at--1091--7631Chr06:152456..152480 (25 bp)
GGGAGCCTCATATATACTACTACAT
LOC_Os06g01230
Target Sequence 
GGATCATGCTGTAACACTCGCAATTCATCTAATAACAAGAAGGAAAGTGTCAGGAGTGAAGATGAAGCTGGATCATGTTG
TAACACTGGAAGTTCATCTAATAACCACAGCGAGGAAAATGACGATGCAGCCTCCCAGATTATGGATGGAGAACCAATGC
ATATTCAGTGCAAAGAGGATACCCCTATTCAAGTGGATCATTCAGCGGAAGTTATGGACAAGCTCCAAGGCTTCTCCTTT
CATGAAGAGATGTTGGTACATGCTAATCAGCCCCGTGGAACTAATCTAAAGCAGAGGCTGTTGAGAGTGGAGTCTAGAAA
TAGCAATGAGAATAATGTACCTTCGTTGGAGACACGAGAACAGCAGCATGCACCTCATATTCAGAAATGGACTAGCTCTG
TTGTGCGACTAGGGTGGGGGTGGCAGTGGCCGGCTCTCTTTGTGATGGCCGGCTCTCTGCTTTTGTTGGTTGGTGTGTGG
AAATCTCTGAATCACACTACCTGACTAATGTAAATAAATGGTCGCTTAGCTTAAGCTTGGGAGCCTCATATATACTACTA
CAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis