Browse Element(s) Details


Os.49528.2.S1_at

Description gb:AK102285.1
DB_XREF= gi:32987494
TID=Os.49528.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089I06, full insert sequence.
FL= gb:AK102285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4491010/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49528.2.S1_at--100--1891NONE
ACGATGGTGAGCTACGCCATGCTGG
NONE
Os.49528.2.S1_at--379--1411Chr04:26359438..26359462 (25 bp)
AAAGGCCGCCGCAAAATAATGGTCA
LOC_Os04g44910
Os.49528.2.S1_at--74--371Chr04:26359453..26359477 (25 bp)
ATAATGGTCACAACAACCCGTTCTC
LOC_Os04g44910
Os.49528.2.S1_at--829--2591Chr04:26359467..26359491 (25 bp)
AACCCGTTCTCCTGGTGACTTGTCA
LOC_Os04g44910
Os.49528.2.S1_at--175--7771Chr04:26359480..26359504 (25 bp)
GGTGACTTGTCATCTATCGTGTAAC
LOC_Os04g44910
Os.49528.2.S1_at--498--8891Chr04:26359536..26359560 (25 bp)
TGAGGTCACTGTTCACTGCTGATTA
LOC_Os04g44910
Os.49528.2.S1_at--99--4711Chr04:26359553..26359577 (25 bp)
GCTGATTACCACAGTATATCCCCAT
LOC_Os04g44910
Os.49528.2.S1_at--278--251Chr04:26359568..26359592 (25 bp)
ATATCCCCATATTAGTTTACCAATC
LOC_Os04g44910
Os.49528.2.S1_at--787--10471Chr04:26359610..26359634 (25 bp)
TTACAGTGAGTGTGCAAAGCTTCGA
LOC_Os04g44910
Os.49528.2.S1_at--734--5291Chr04:26359635..26359659 (25 bp)
GAAGGCATTTAGCATCTCAGATTTT
LOC_Os04g44910
Os.49528.2.S1_at--1081--1531Chr04:26359645..26359669 (25 bp)
AGCATCTCAGATTTTCAGCGTCGTG
LOC_Os04g44910
Target Sequence 
ACGATGGTGAGCTACGCCATGCTGGCGCTGATGCAGAACGACGGGTTCGACTCGTTCGCCATGTCCTTCCCTTCCACCGT
CACGTCGACCGCCAGCCCCATGTCCGCCGACGTCTCGGCCGTGTCCGGCCTCTCCGGTGGAAGGTGAACAAACAAACAAA
AAGGCCGCCGCAAAATAATGGTCACAACAACCCGTTCTCCTGGTGACTTGTCATCTATCGTGTAACATAGTGTAGAGCAC
TAGTGACTACGTAGTAGTGAGGTCACTGTTCACTGCTGATTACCACAGTATATCCCCATATTAGTTTACCAATCAAGCAG
TAATACGTATATTACAGTGAGTGTGCAAAGCTTCGAGAAGGCATTTAGCATCTCAGATTTTCAGCGTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49528.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis