Browse Element(s) Details


Os.49586.1.S1_a_at

Description gb:AK073321.1
DB_XREF= gi:32983344
TID=Os.49586.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030I04, full insert sequence.
FL= gb:AK120426.1 gb:AK073321.1 gb:AK060130.1 gb:AK104745.1 gb:AK061869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3527411/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49586.1.S1_a_at--1046--1871Chr05:20865562..20865586 (25 bp)
ACGTTAGCCGTCGTACTGACAGGCA
LOC_Os05g35274
Os.49586.1.S1_a_at--956--311Chr05:20865528..20865552 (25 bp)
ATACCCGTCCTACTAGCATATTGAG
LOC_Os05g35274
Os.49586.1.S1_a_at--1040--10811Chr05:20865449..20865473 (25 bp)
TTGTCTCAGCCCTTCTGTAATATCA
LOC_Os05g35274
Os.49586.1.S1_a_at--962--8751Chr05:20865374..20865398 (25 bp)
TGTAGGCCGATGCTTATCTTTTCCA
LOC_Os05g35274
Os.49586.1.S1_a_at--1046--10151Chr05:20865360..20865384 (25 bp)
TATCTTTTCCATTGTTCTGTTCTCA
LOC_Os05g35274
Os.49586.1.S1_a_at--388--51Chr05:20865333..20865357 (25 bp)
ATTGTAGTCAGACTTGTGCCCGCTG
LOC_Os05g35274
Os.49586.1.S1_a_at--1034--10151Chr05:20865306..20865330 (25 bp)
TATCTCCCATGTCATGTCCTAGTGA
LOC_Os05g35274
Os.49586.1.S1_a_at--743--1111Chr05:20865286..20865310 (25 bp)
AGTGATAGCATCATGCCTCCACTAA
LOC_Os05g35274
Os.49586.1.S1_a_at--417--651Chr05:20865262..20865286 (25 bp)
ATGCAGCTGTACCAAGACTTAGTCT
LOC_Os05g35274
Os.49586.1.S1_a_at--767--9071Chr05:20865179..20865203 (25 bp)
TGCTTCTGTGTTCCAGTGGGACCAA
LOC_Os05g35274
Os.49586.1.S1_a_at--97--3611Chr05:20865139..20865163 (25 bp)
CTTGGTGTATTTTGTTCTTCTCGTC
LOC_Os05g35274
Target Sequence 
ACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTAT
GCTAACAGATTAGCCCAGCGATGTCAATGTTNGTTGTCTCAGCCCTTCTGTAATATCATCTATGTATTCACCANTACATG
CATGTAAATATGTCTTATGGCTTAGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATTGTAGTCAG
ACTTGTGCCCGCTGGTTATCTCCCATGTCATGTCCTAGTGATAGCATCATGCCTCCACTAATGCAGCTGTACCAAGACTT
AGTCTAATTGCAGGGATGGCTGGCAATTTGTGTTTTAATATTTAATCTAGTGATGTTTGTTGTTGCTTCTGTGTTCCAGT
GGGACCAAGTTTGTGCTTGAGTTCTTGGTGTATTTTGTTCTTCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49586.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis