Browse Element(s) Details


Os.4969.1.S1_at

Description gb:AK070629.1
DB_XREF= gi:32980653
TID=Os.4969.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1111_G12.10 (OJ1111_G12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055J16, full insert sequence.
FL= gb:AK070629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2388011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23850OsAffx.2070.2.S1_at11/111+13405234..13407106TMP repeat family protein, expressed
LOC_Os01g23870Os.35110.1.S1_a_at11/111+13419372..13421048expressed protein
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified
LOC_Os01g23910OsAffx.5895.1.S1_at3/111+13437389..13438368hypothetical protein
LOC_Os01g23910Os.14894.3.A1_at1/111+13437389..13438368hypothetical protein
LOC_Os01g23920OsAffx.11181.1.S1_at11/111+13442060..13443074hypothetical protein
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23940OsAffx.23361.2.S1_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940OsAffx.23361.2.S1_x_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.56255.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.29803.1.S1_x_at1/111+13450471..13452240hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4969.1.S1_at--773--5731Chr01:13425681..13425705 (25 bp)
GACGGTGGATGCAGCCCGAATCCGA
LOC_Os01g23880
Os.4969.1.S1_at--704--5251Chr01:13425698..13425722 (25 bp)
GAATCCGATCGACATGCAGGCCGAG
LOC_Os01g23880
Os.4969.1.S1_at--428--5011Chr01:13425713..13425737 (25 bp)
GCAGGCCGAGGAGTTCATCGCGAAA
LOC_Os01g23880
Os.4969.1.S1_at--823--10331Chr01:13425750..13425774 (25 bp)
TTTAGGCTGCAAAAGTCGGACTCAT
LOC_Os01g23880
Os.4969.1.S1_at--744--8111Chr01:13425767..13425791 (25 bp)
GGACTCATTCAACAACCGAGCCTAT
LOC_Os01g23880
Os.4969.1.S1_at--330--5871Chr01:13425784..13425808 (25 bp)
GAGCCTATTGATCGATCTCAGTGTT
LOC_Os01g23880
Os.4969.1.S1_at--991--9751Chr01:13425924..13425948 (25 bp)
TAATCACATTCGCTGTTTCTTCTCC
LOC_Os01g23880
Os.4969.1.S1_at--1139--3491Chr01:13425948..13425972 (25 bp)
CATGTAATCTCCGTCCTTCAAAGAA
LOC_Os01g23880
Os.4969.1.S1_at--151--831Chr01:13425976..13426000 (25 bp)
ATGGTATTCGCTAGATTTCAGATTC
LOC_Os01g23880
Os.4969.1.S1_at--623--6731Chr01:13426063..13426087 (25 bp)
GTTCTTACGTATTTGCTACACATCA
LOC_Os01g23880
Os.4969.1.S1_at--1063--8211Chr01:13426101..13426125 (25 bp)
GGCAATAGGCCACCACATTGTTTGA
LOC_Os01g23880
Target Sequence 
GACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCA
AAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTC
CGANTGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTNGNG
TCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATT
CTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCT
ACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis