Browse Element(s) Details


Os.49778.1.S1_at

Description gb:AB109238.1
DB_XREF= gi:37999049
GEN=OsASY1
TID=Os.49778.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49778 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsASY1 mRNA for essential protein for meiotic synapsis, complete cds.
PROD=essential protein for meiotic synapsis
FL= gb:AK064028.1 gb:AK102636.1 gb:AB109238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3293011/11meiotic asynaptic mutant 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32870Os.27165.1.A1_at11/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32870OsAffx.27735.1.S1_at1/119+19593860..19597258F-box domain containing protein, expressed
LOC_Os09g32880NANA9+19598725..19600526hypothetical protein
LOC_Os09g32890NANA9+19608976..19609476hypothetical protein
LOC_Os09g32899NANA9+19610344..19611198NA
LOC_Os09g32910OsAffx.14216.1.S1_x_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32910Os.53165.1.S1_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32910OsAffx.27325.2.S1_x_at1/119+19612903..19617466F-box domain containing protein, expressed
LOC_Os09g32920NANA9+19618356..19619770hypothetical protein
LOC_Os09g32930Os.49778.1.S1_at11/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.44431.2.S1_x_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32930Os.9810.1.S1_at1/119+19620223..19628268meiotic asynaptic mutant 1, putative, expressed
LOC_Os09g32940Os.50887.1.A1_x_at11/119+19630152..19634193expressed protein
LOC_Os09g32944OsAffx.2442.1.S1_x_at1/119+19643053..19647823SBP domain containing protein
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007130biological_processsynaptonemal complex formation
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49778.1.S1_at--1113--811Chr09:19627459..19627483 (25 bp)
ATGGATCGACGATGGGTTGCCTCCA
LOC_Os09g32930
Os.49778.1.S1_at--798--1431Chr09:19627534..19627558 (25 bp)
AGAACGTGTCCATGCAGAGCGGGCA
LOC_Os09g32930
Os.49778.1.S1_at--352--2711Chr09:19627586..19627610 (25 bp)
AAGCAGGACTCCTACAAGCGTGCGC
LOC_Os09g32930
Os.49778.1.S1_at--963--1631Chr09:19627836..19627860 (25 bp)
AGCGATTCAGGAAGGCCAGCACGGT
LOC_Os09g32930
Os.49778.1.S1_at--129--2671Chr09:19628004..19628028 (25 bp)
AAGCGCCAGAAGTCCCAAGTTCAAG
LOC_Os09g32930
Os.49778.1.S1_at--1112--1211Chr09:19628033..19628057 (25 bp)
AGTTCAGTGAGGGTTCGTGTCGCAA
LOC_Os09g32930
Os.49778.1.S1_at--306--7451Chr09:19628049..19628073 (25 bp)
GTGTCGCAAGCGTCAGGAGCAACTA
LOC_Os09g32930
Os.49778.1.S1_at--991--10031Chr09:19628126..19628150 (25 bp)
TAGTTCCGGTGCTCAAGTTTGTGCA
LOC_Os09g32930
Os.49778.1.S1_at--259--1371Chr09:19628160..19628184 (25 bp)
AGAGCACTCACGCACACGTAGATAT
LOC_Os09g32930
Os.49778.1.S1_at--812--1891Chr09:19628175..19628199 (25 bp)
ACGTAGATATCTGTCCATGCCGCTG
LOC_Os09g32930
Os.49778.1.S1_at--376--10031Chr09:19628220..19628244 (25 bp)
TAGACGCTACTATGTGCTAACACAC
LOC_Os09g32930
Target Sequence 
ATGGATCGACGATGGGTTGCCTCCAGTCCGTCGGATCTGACCTCACCCGCACCCGGGAGCTTCCGGAGCCGCAGCAGAAC
GTGTCCATGCAGAGCGGGCAGGAAGCTTCCACGGTGGATAAGGATCCAAGCAGGACTCCTACAAGCGTGCGCGAGCAGGC
GTCCGTTTGTTCCCTGGAGAGTGGGGTTCTCGGGCAGAAGGTCAGAAAGTCTTTGGCTGGTGCTGGCGGGACGCAGTGCT
CGCAGGACAAGCGATTCAGGAAGGCCAGCACGGTGAAGGAGCCGATCCTCCAGTACGTCAAGCGCCAGAAGTCCCAAGTT
CAAGTTCAAGTTCAGTGAGGGTTCGTGTCGCAAGCGTCAGGAGCAACTAACATCGTAGTTCAGGTGCAGAAGACCACAAG
TAGATATATCCATCCTATTCCTAGTTCCGGTGCTCAAGTTTGTGCAGATAGTCAGAGAGCACTCACGCACACGTAGATAT
CTGTCCATGCCGCTGTCCCAAATGGCAAATGGAGATAGACGCTACTATGTGCTAACACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis