Browse Element(s) Details


Os.49825.1.S1_at

Description gb:AK100311.1
DB_XREF= gi:32985520
TID=Os.49825.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078K23, full insert sequence.
FL= gb:AK100311.1 gb:AK111789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1530011/11zinc finger helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed
LOC_Os01g15330OsAffx.22218.1.S1_at11/111+8581619..8582171hypothetical protein
LOC_Os01g15340Os.487.1.S1_at11/111+8582959..8583743FPF1 protein, putative, expressed
LOC_Os01g15350Os.9029.2.S1_x_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_a_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0006259biological_processDNA metabolism
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003724molecular_functionRNA helicase activity
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49825.1.S1_at--314--5851Chr01:8557782..8557806 (25 bp)
GACCATTATAGGTTATTTCCACATG
LOC_Os01g15300
Os.49825.1.S1_at--413--7831Chr01:8557746..8557770 (25 bp)
GGTCAAGCCATTTTGCGAACTGTAA
LOC_Os01g15300
Os.49825.1.S1_at--139--10411Chr01:8557719..8557743 (25 bp)
TTTTGGTCAGTTCAGCTTTTACAGA
LOC_Os01g15300
Os.49825.1.S1_at--1012--2931Chr01:8557689..8557713 (25 bp)
AAGGCTTACTTGAGTGCTATCTGAA
LOC_Os01g15300
Os.49825.1.S1_at--778--9091Chr01:8557631..8557655 (25 bp)
TGCTGTTTTAAATGTTGGTTCCGAA
LOC_Os01g15300
Os.49825.1.S1_at--585--7891Chr01:8557615..8557639 (25 bp)
GGTTCCGAACTTAAATTGATGCCAA
LOC_Os01g15300
Os.49825.1.S1_at--633--6791Chr01:8557570..8557594 (25 bp)
GTTATGTTAATGTGCAATCCCTTAT
LOC_Os01g15300
Os.49825.1.S1_at--34--3051Chr01:8557555..8557579 (25 bp)
AATCCCTTATCATTCCGTAACATCA
LOC_Os01g15300
Os.49825.1.S1_at--643--2551Chr01:8557506..8557530 (25 bp)
AACTGTATCATCAAACGTGGCACTG
LOC_Os01g15300
Os.49825.1.S1_at--343--6511Chr01:8557476..8557500 (25 bp)
GATATGTTTCTTTGACCTCATGGAT
LOC_Os01g15300
Os.49825.1.S1_at--1136--6511Chr01:8557454..8557478 (25 bp)
GATTTGGTTTATTGACCTCATGGTC
LOC_Os01g15300
Target Sequence 
GACCATTATAGGTTATTTCCACATGTGAATAGCTTTGGTCAAGCCATTTTGCGAACTGTAATTTTTTGGTCAGTTCAGCT
TTTACAGAAGTGTAAGGCTTACTTGAGTGCTATCTGAATTAGAATTCACTAGGGAACTTTAACTGAAGGGATGCTGTTTT
AAATGTTGGTTCCGAACTTAAATTGATGCCAAATTTCCNGAACTGAAAGCTTGTTATGTTAATGTGCAATCCCTTATCAT
TCCGTAACATCAGTAACTTAACTTTTTTTCATCCTCAACTGTATCATCAAACGTGGCACTGATGTGGATATGTTTCTTTG
ACCTCATGGATTTGGTTTATTGACCTCATGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis