Browse Element(s) Details


Os.49891.1.S2_at

Description gb:AK119295.1
DB_XREF= gi:37988918
TID=Os.49891.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E05, full insert sequence.
FL= gb:AK119295.1 gb:AK103212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0306010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49891.1.S2_at--582--7811Chr07:1161096..1161120 (25 bp)
GGTCTAGCTAGTTTCTTCTATCACT
LOC_Os07g03060
Os.49891.1.S2_at--809--2371Chr07:1161159..1161183 (25 bp)
AAACCGAGGTACGACTTGATCAAGA
LOC_Os07g03060
Os.49891.1.S2_at--961--2331Chr07:1161200..1161224 (25 bp)
AAAGACTTGATTAGTCCCTCTCCCA
LOC_Os07g03060
Os.49891.1.S2_at--249--2051Chr07:1161266..1161290 (25 bp)
ACTTTCCAGTAATGTTGCTTGTGCA
LOC_Os07g03060
Os.49891.1.S2_at--728--5291Chr07:1161298..1161322 (25 bp)
GAAGGTTGCCGTTCTTTTTCTCGTG
LOC_Os07g03060
Os.49891.1.S2_at--1038--9411NONE
TCGTGCTCCATGCAGACCGAGGAAG
NONE
Os.49891.1.S2_at--681--8391Chr07:1161370..1161394 (25 bp)
GGCGCAGCTTATCGATCCCAGATTA
LOC_Os07g03060
Os.49891.1.S2_at--975--531Chr07:1161384..1161408 (25 bp)
ATCCCAGATTATTCTGCGGCAGCGA
LOC_Os07g03060
Os.49891.1.S2_at--758--6031Chr07:1161509..1161533 (25 bp)
GAGATTAAAACTCCGACTCCTCTAA
LOC_Os07g03060
Os.49891.1.S2_at--157--191Chr07:1161565..1161589 (25 bp)
ATTTATCGCTTCATTTTTCTCTCTC
LOC_Os07g03060
Os.49891.1.S2_at--957--5951Chr07:1161624..1161648 (25 bp)
GAGCAATCCTGCATGCAATCGACCA
LOC_Os07g03060
Target Sequence 
GGTCTAGCTAGTTTCTTCTATCACTGANNTTTCACGNNNNNNNTNNNNNNAAAAAAAAATTCTAAACCGAGGTACGACTT
GATCAAGAGTTCATTAAGATAATAAAAGACTTGATTAGTCCCTCTCCCATCATGATGATTCCCTGGAAAATGAAACAAAT
TATAACTAGCACTTTCCAGTAATGTTGCTTGTGCAGGAGAAGGAAGGTTGCCGTTCTTTTTCTCGTGCTCCATGCAGACC
GAGGAAGGAAACGTCATGCCCAGGCGATCTCGCCGGCGCAGCTTATCGATCCCAGATTATTCTGCGGCAGCGACCACGTC
GGCGGCTCCGCCATGGATGATCGGCGAGGAAACGTGCCGACGAATGGGTCGTGTATTTTCTTAAAAAAAGAAAAAACCGA
ACCAAGGGGTTCGGAGATTAAAACTCCGACTCCTCTAACCCTCACCTTTTTTTTTCGAGTGGAACGATGATTTATCGCTT
CATTTTTCTCTCTCCCTGCAGAGAACCGAATGTAACTAATCGATTAGAGAGCAATCCTGCATGCAATCGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49891.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis