Browse Element(s) Details


Os.49920.1.S1_at

Description gb:AK119356.1
DB_XREF= gi:37988979
TID=Os.49920.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F12, full insert sequence.
FL= gb:AK119356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g171801/11COP9 signalosome complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49920.1.S1_at--934--6751Chr03:34963776..34963800 (25 bp)
GTTAACTGGTTCCATCAGTTGCCGG
NONE
Os.49920.1.S1_at--182--9632Chr01:9880078..9880097 (20 bp)
TCAGTTGCCGGTTTATTCCTTTGAA
LOC_Os01g17180
Os.49920.1.S1_at--229--2571Chr03:34963679..34963703 (25 bp)
AACTGTGGTCATGTTGTTTCTGAAA
NONE
Os.49920.1.S1_at--41--1571Chr03:34963575..34963599 (25 bp)
AGCTCTTGGGCAACTTTTCCTGAAT
NONE
Os.49920.1.S1_at--90--2591Chr03:34963476..34963500 (25 bp)
AACGATGTCGATTTCAGGCTTGATA
NONE
Os.49920.1.S1_at--948--2231Chr03:34963452..34963476 (25 bp)
AACATCGTAGTATCTTTTTTCCTAG
NONE
Os.49920.1.S1_at--1104--10651Chr03:34963434..34963458 (25 bp)
TTCCTAGATTTCTCTGTGTCACTGC
NONE
Os.49920.1.S1_at--984--9231Chr03:34963385..34963409 (25 bp)
TCCTCTTCTTTCTCCAAAGCTATGA
NONE
Os.49920.1.S1_at--703--6431Chr03:34963357..34963381 (25 bp)
GATCACATCCAAGTCCGAATGGCCA
NONE
Os.49920.1.S1_at--1112--3511Chr03:34963286..34963310 (25 bp)
CATGAATGCTTTTCTATTGGCGTAG
NONE
Os.49920.1.S1_at--301--211Chr03:34963250..34963274 (25 bp)
ATTTGTCGGATTTCTCATGCGTCAA
NONE
Target Sequence 
GTTAACTGGTTCCATCAGTTGCCGGTTTATTCCTTTGAATAATAAGTTCGCTGAATATTTCTGAATAATAAGTTCACTGA
ATATTTCTGAATAAGTTAACTGTGGTCATGTTGTTTCTGAAATTTGGATGAGGAAGTTTTTATTGGTTTTCACTTTTTTG
AGAGGCATCAAGTTGAAAGGAAAAGGGGGAGCAGATTGCAGAGCTCTTGGGCAACTTTTCCTGAATCATCATGAGCCATT
AGGAGATAAGGAGAGGCAGACAGGAAAAGAGAGAGATGTGCCATTGTTCATGCAGAGATCAACGATGTCGATTTCAGGCT
TGATAACATCGTAGTATCTTTTTTCCTAGATTTCTCTGTGTCACTGCCTCGATCTTGGGCCAGCCAGCTACTCCTCTTCT
TTCTCCAAAGCTATGATAAGATCACATCCAAGTCCGAATGGCCACACCACAAGAAAGCACTTCCATGAACTAACATTTTA
TCTATGACTGCATGAATGCTTTTCTATTGGCGTAGAAAAACGTCAGATTTGTCGGATTTCTCATGCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis