Browse Element(s) Details


Os.49934.1.S1_at

Description gb:AK119399.1
DB_XREF= gi:37989022
TID=Os.49934.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-D12, full insert sequence.
FL= gb:AK119399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4223011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42210OsAffx.25484.1.S1_at11/113+23438913..23439290hypothetical protein
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed
LOC_Os03g42250OsAffx.25485.2.S1_at11/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42250OsAffx.17993.1.S1_at1/113+23463203..23465915B3 DNA binding domain containing protein
LOC_Os03g42260OsAffx.13302.1.S1_at11/113+23467293..23467859expressed protein
LOC_Os03g42270OsAffx.27522.1.S1_x_at5/113+23470646..23476093retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49934.1.S1_at--675--1691Chr03:23449735..23449759 (25 bp)
AGCCACCTGTCTCGGTTGCAAAAGA
LOC_Os03g42230
Os.49934.1.S1_at--1058--5971Chr03:23449771..23449795 (25 bp)
GAGAAAGTGCGATCCTTCCAATCCA
LOC_Os03g42230
Os.49934.1.S1_at--375--2251Chr03:23449795..23449819 (25 bp)
AAATTTCCCGTTTATGTAGCAATCA
LOC_Os03g42230
Os.49934.1.S1_at--801--2991Chr03:23449831..23449855 (25 bp)
AATGTTGAGCGAAGTGCTTCCCGTT
LOC_Os03g42230
Os.49934.1.S1_at--706--1311Chr03:23450301..23450325 (25 bp)
AGATGGGCCACCGTGATGCAGATCA
LOC_Os03g42230
Os.49934.1.S1_at--33--8851Chr03:23450347..23450371 (25 bp)
TGATCAGCGGCTGGCACAGGTTCGT
LOC_Os03g42230
Os.49934.1.S1_at--601--4471Chr03:23450404..23450428 (25 bp)
GCCTGTTTGAGTTCAAGACGCACGA
LOC_Os03g42230
Os.49934.1.S1_at--307--8711Chr03:23450450..23450474 (25 bp)
TGTCCATGCCATCTTCAGGGAGCAG
LOC_Os03g42230
Os.49934.1.S1_at--1146--3451Chr03:23450472..23450496 (25 bp)
CAGTGCTGTTAGCTTTGTTCTGCTC
LOC_Os03g42230
Os.49934.1.S1_at--957--9071Chr03:23450513..23450537 (25 bp)
TGCTTTGCGGTTTCAGATTTCAGGT
LOC_Os03g42230
Os.49934.1.S1_at--621--2231Chr03:23450594..23450618 (25 bp)
ACAATAAGCTATTCTGACCGGCGAT
LOC_Os03g42230
Target Sequence 
AGCCACCTGTCTCGGTTGCAAAAGAAGATAGTTGAAGAGAAAGTGCGATCCTTCCAATCCAAATTTCCCGTTTATGTAGC
AATCATGAAGAAGAGCAATGTTGAGCGAAGTGCTTCCCGTTGCCAGCTAGAGCTAGGCGCGCGATTCGCCGCTGCTGTTC
ATCTTCCAGACAGGAGGCAGACCGTGGTGCTGCAGCGGAGGGGGGAGAGATGGGCCACCGTGATGCAGATCAGGAGCGGA
ACCAGGCGGCTCCTGATCAGCGGCTGGCACAGGTTCGTGCGCGACAACCGCCTGCGCGTCGGGGACATCTGCCTGTTTGA
GTTCAAGACGCACGAGAGGTGGCGGCTCACCATGGCTGTCCATGCCATCTTCAGGGAGCAGTGCTGTTAGCTTTGTTCTG
CTCTGCTGTCTGCTGCTGCTGCTTTGCGGTTTCAGATTTCAGGTGGTGGCGTTTTGAAGCAGTTGCACTGCATAATATGT
AATGTGTAGTAAGAGCAGGTACAATAAGCTATTCTGACCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis