Browse Element(s) Details


Os.50057.1.S1_at

Description gb:AK119803.1
DB_XREF= gi:37989426
TID=Os.50057.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-F03, full insert sequence.
FL= gb:AK119803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4220011/11Dof domain, zinc finger family protein, expressed
LOC_Os11g392201/11Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42130Os.21103.1.S1_x_at11/113+23404474..23406465oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g42140OsAffx.13301.1.S1_at9/113+23407690..23408183hypothetical protein
LOC_Os03g42150NANA3+23409424..23412158retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42160Os.7890.2.S1_x_at1/113+23413677..23414345hypothetical protein
LOC_Os03g42170NANA3+23415237..23415899retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g42180NANA3+23417227..23417595hypothetical protein
LOC_Os03g42190OsAffx.3484.1.S1_at11/113+23419010..23420747expressed protein
LOC_Os03g42190Os.50274.1.S1_a_at1/113+23419010..23420747expressed protein
LOC_Os03g42200Os.50057.1.S1_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.3.S1_x_at11/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42200OsAffx.32109.2.S1_x_at5/113+23426572..23430025Dof domain, zinc finger family protein, expressed
LOC_Os03g42210OsAffx.25484.1.S1_at11/113+23438913..23439290hypothetical protein
LOC_Os03g42220Os.26722.2.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42220Os.26722.1.S1_at11/113+23439812..23444956T-complex protein 1, beta subunit, putative, expressed
LOC_Os03g42230Os.49934.1.S1_at11/113+23446289..23450618B3 DNA binding domain containing protein, expressed
LOC_Os03g42240OsAffx.25485.1.S1_at10/113+23454315..23457782B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001676biological_processlong-chain fatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0045449biological_processregulation of transcription
GO:0005777cellular_componentperoxisome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003997molecular_functionacyl-CoA oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50057.1.S1_at--312--2151Chr03:23429279..23429303 (25 bp)
ACAGCTTCTGTGATAGTACTTCTAC
LOC_Os03g42200
Os.50057.1.S1_at--172--2452Chr05:6271289..6271710 (25 bp)
AAAATACTTTCCCATGCATGCATGC
NONE
Os.50057.1.S1_at--232--651Chr03:23429223..23429247 (25 bp)
ATGCATGTAATGGTCGACTAGGATT
LOC_Os03g42200
Os.50057.1.S1_at--457--10512Chr11:22856003..22856103 (24 bp)
TTAATTGTGTTTTCAGTACTGCTGC
LOC_Os11g39220
Os.50057.1.S1_at--987--1172Chr06:11213770..11213789 (20 bp)
AGTACTGCTGCAGGATGTTCCCGTA
NONE
Os.50057.1.S1_at--431--7991Chr03:23429169..23429193 (25 bp)
GGATGTTCCCGTAGTTAGTCGATAT
LOC_Os03g42200
Os.50057.1.S1_at--850--271Chr03:23429148..23429172 (25 bp)
ATATGGAGGGTGTCTAATAGCGCTG
LOC_Os03g42200
Os.50057.1.S1_at--715--2331Chr03:23429133..23429157 (25 bp)
AATAGCGCTGGGTGGGTTAATTACG
LOC_Os03g42200
Os.50057.1.S1_at--179--151Chr03:23429114..23429138 (25 bp)
ATTACGTGTTCTTTACTGCGTGGTC
LOC_Os03g42200
Os.50057.1.S1_at--1115--1931Chr03:23429100..23429124 (25 bp)
ACTGCGTGGTCGATGTTAGTACGAA
LOC_Os03g42200
Os.50057.1.S1_at--1026--10111Chr03:23429023..23429047 (25 bp)
TATGATCCATAGTACCGAGCTAGTA
LOC_Os03g42200
Target Sequence 
ACAGCTTCTGTGATAGTACTTCTACAGTGCAAAAATACTTTCCCATGCATGCATGCATGCATGTAATGGTCGACTAGGAT
TAGCTTAATTGTGTTTTCAGTACTGCTGCAGGATGTTCCCGTAGTTAGTCGATATGGAGGGTGTCTAATAGCGCTGGGTG
GGTTAATTACGTGTTCTTTACTGCGTGGTCGATGTTAGTACGAACGTTGTTGTTGTTGTGTTCTGTTTTAAAACAAGTGT
TACTGTGTGTGTGGTATATGATCCATAGTACCGAGCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis