Browse Element(s) Details


Os.50249.2.S1_at

Description gb:AK120329.1
DB_XREF= gi:37989952
TID=Os.50249.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058K09, full insert sequence.
FL= gb:AK120329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2164011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50249.2.S1_at--535--431Chr03:12337287..12337311 (25 bp)
ATCTTGATAGAGGAGTTTTTCTTCC
LOC_Os03g21640
Os.50249.2.S1_at--84--6491Chr03:12337292..12337316 (25 bp)
GATAGAGGAGTTTTTCTTCCTTCTG
LOC_Os03g21640
Os.50249.2.S1_at--504--10031Chr03:12337294..12337318 (25 bp)
TAGAGGAGTTTTTCTTCCTTCTGAA
LOC_Os03g21640
Os.50249.2.S1_at--353--6171Chr03:12337296..12337320 (25 bp)
GAGGAGTTTTTCTTCCTTCTGAAAT
LOC_Os03g21640
Os.50249.2.S1_at--173--7751Chr03:12337298..12337322 (25 bp)
GGAGTTTTTCTTCCTTCTGAAATGG
LOC_Os03g21640
Os.50249.2.S1_at--158--6071Chr03:12337299..12337323 (25 bp)
GAGTTTTTCTTCCTTCTGAAATGGA
LOC_Os03g21640
Os.50249.2.S1_at--369--10371Chr03:12337303..12337327 (25 bp)
TTTTCTTCCTTCTGAAATGGAAAAG
LOC_Os03g21640
Os.50249.2.S1_at--367--2951Chr03:12337318..12337342 (25 bp)
AATGGAAAAGGATTGCCACTTTTGA
LOC_Os03g21640
Os.50249.2.S1_at--628--2911Chr03:12337325..12337349 (25 bp)
AAGGATTGCCACTTTTGATTATGAA
LOC_Os03g21640
Os.50249.2.S1_at--366--6591Chr03:12337328..12337352 (25 bp)
GATTGCCACTTTTGATTATGAATGT
LOC_Os03g21640
Os.50249.2.S1_at--348--4391Chr03:12337332..12337356 (25 bp)
GCCACTTTTGATTATGAATGTTTGA
LOC_Os03g21640
Target Sequence 
ATCTTGATAGAGGAGTTTTTCTTCCTTCTGAAATGGAAAAGGATTGCCACTTTTGATTATGAATGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50249.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis