Browse Element(s) Details


Os.50313.1.S1_at

Description gb:AK120675.1
DB_XREF= gi:37990298
TID=Os.50313.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161M19, full insert sequence.
FL= gb:AK120675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2879011/11PAP_fibrillin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28760OsAffx.26141.3.S1_x_at10/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28760OsAffx.26141.4.S1_x_at7/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28760OsAffx.26141.4.S1_at4/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28770Os.45976.1.S1_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28770Os.45976.1.S1_x_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28780Os.46306.1.S1_x_at3/117+16845108..16848037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28790Os.50313.1.S1_at11/117+16855498..16860933PAP_fibrillin family protein, expressed
LOC_Os07g28800OsAffx.16458.1.S1_at11/117+16861585..16865428DnaJ domain containing protein
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50313.1.S1_at--897--9051Chr07:16859743..16859767 (25 bp)
TGCATCTGCTGGTCTGAAGGGTGTC
LOC_Os07g28790
Os.50313.1.S1_at--1161--10851Chr07:16859921..16859945 (25 bp)
TTGGTAAGACCCTTTCCAGGTGTCA
LOC_Os07g28790
Os.50313.1.S1_at--317--4351Chr07:16859936..16859960 (25 bp)
CCAGGTGTCAGCCTCAATGCAAGTG
LOC_Os07g28790
Os.50313.1.S1_at--675--1611Chr07:16860462..16860486 (25 bp)
AGCTGGTGGGTTACAGTTTCCCTTG
LOC_Os07g28790
Os.50313.1.S1_at--378--1211Chr07:16860476..16860500 (25 bp)
AGTTTCCCTTGGATGCTCGAGGAGA
LOC_Os07g28790
Os.50313.1.S1_at--606--2711Chr07:16860635..16860659 (25 bp)
AAGCTTGTCCATGTACGCATTGCAA
LOC_Os07g28790
Os.50313.1.S1_at--506--5591Chr07:16860695..16860719 (25 bp)
GAAATCGCTTGACTTCATCACTGAG
LOC_Os07g28790
Os.50313.1.S1_at--1107--3051Chr07:16860720..16860744 (25 bp)
AATCTTTGGAGACTTCATCACTGAG
LOC_Os07g28790
Os.50313.1.S1_at--792--6271Chr07:16860769..16860793 (25 bp)
GATGTACACGTTGTAGTTGACCGCT
LOC_Os07g28790
Os.50313.1.S1_at--1075--6631Chr07:16860784..16860808 (25 bp)
GTTGACCGCTACCAGTACAATAGTA
LOC_Os07g28790
Os.50313.1.S1_at--351--9091Chr07:16860847..16860871 (25 bp)
TGCTCAATCCTTTTCTCCAATGATA
LOC_Os07g28790
Target Sequence 
TGCATCTGCTGGTCTGAAGGGTGTCCAGATCATAAAAGAAGATGGGCAATTGAAGAATTTGGTAAGACCCTTTCCAGGTG
TCAGCCTCAATGCAAGTGGCAACATATGTAAAAATGAGGATGGCAATAACTTTAACTTGTCCATAAATAAAGGAGCTATT
CAAGCTGGTGGGTTACAGTTTCCCTTGGATGCTCGAGGAGAATTTGCCATGGAAATATTGTATATTGACAATAAGATAAG
GATATCTAATATTAACCAACACAAGCTTGTCCATGTACGCATTGCAAATAGAACATAAAACTAAAATGTAGGGATCTATG
AAGAAATCGCTTGACTTCATCACTGAGAATCTTTGGAGACTTCATCACTGAGAATCTTTGGATTCAATGATCAGATGATG
TACACGTTGTAGTTGACCGCTACCAGTACAATAGTAAGATTCCTGTAATTATAGATTCGCATGAGGTTTGCAGATGCTCA
ATCCTTTTCTCCAATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis