Browse Element(s) Details


Os.50317.1.S1_at

Description gb:AK120694.1
DB_XREF= gi:37990317
TID=Os.50317.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170G05, full insert sequence.
FL= gb:AK120694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g131505/11metallo-beta-lactamase superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50317.1.S1_at--749--6211Chr01:7328813..7328837 (25 bp)
GAGGCTGTTATGTAGTACTGATATA
LOC_Os01g13150
Os.50317.1.S1_at--835--5951Chr01:7328883..7328907 (25 bp)
GAGAATCCAATTGTAGACAGCGCCA
LOC_Os01g13150
Os.50317.1.S1_at--918--3171Chr01:7328890..7328914 (25 bp)
CAATTGTAGACAGCGCCATCCATGC
LOC_Os01g13150
Os.50317.1.S1_at--706--1651Chr01:7328901..7328925 (25 bp)
AGCGCCATCCATGCGATATGTTACT
LOC_Os01g13150
Os.50317.1.S1_at--1016--711Chr01:7328918..7328942 (25 bp)
ATGTTACTAGTGAGGCCAACCACCC
LOC_Os01g13150
Os.50317.1.S1_at--1033--2631Chr01:7328935..7328959 (25 bp)
AACCACCCTGCATTCAGATACTAGA
NONE
Os.50317.1.S1_at--1141--6471Chr01:7328951..7328975 (25 bp)
GATACTAGAATAGCTGTACTGTCAA
NONE
Os.50317.1.S1_at--751--1611Chr01:7328962..7328986 (25 bp)
AGCTGTACTGTCAATTTTTGGCGTT
NONE
Os.50317.1.S1_at--314--3191Chr01:7328973..7328997 (25 bp)
CAATTTTTGGCGTTGTCTTGTGCAA
NONE
Os.50317.1.S1_at--250--8471Chr01:7328980..7329004 (25 bp)
TGGCGTTGTCTTGTGCAATAAGCAT
NONE
Os.50317.1.S1_at--70--7351Chr01:7328992..7329016 (25 bp)
GTGCAATAAGCATTGTCGGCAATTT
NONE
Target Sequence 
GAGGCTGTTATGTAGTACTGATATAAGATAGAATAGTGTACAACAATTTAAATAGAATGATTTTTGACCTGAGAATCCAA
TTGTAGACAGCGCCATCCATGCGATATGTTACTAGTGAGGCCAACCACCCTGCATTCAGATACTAGAATAGCTGTACTGT
CAATTTTTGGCGTTGTCTTGTGCAATAAGCATTGTCGGCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis