Browse Element(s) Details


Os.50345.1.S1_at

Description gb:AK120808.1
DB_XREF= gi:37990431
TID=Os.50345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014B13, full insert sequence.
FL= gb:AK120808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0736411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50345.1.S1_at--11--5791Chr01:3475672..3475696 (25 bp)
GACGACCCGCCATGAATGCGGCTCT
LOC_Os01g07364
Os.50345.1.S1_at--405--7491Chr01:3475603..3475627 (25 bp)
GTGGTGAAGGACACACTCGTCGGCT
LOC_Os01g07364
Os.50345.1.S1_at--530--6571Chr01:3475527..3475551 (25 bp)
GATTCTCGGCCACCCTTTGTGTACG
LOC_Os01g07364
Os.50345.1.S1_at--3--10251Chr01:3475512..3475536 (25 bp)
TTTGTGTACGTCTCCTACCTCCATA
LOC_Os01g07364
Os.50345.1.S1_at--311--311Chr01:3475490..3475514 (25 bp)
ATAGCCACCGCGTGCAACTCTAGTC
LOC_Os01g07364
Os.50345.1.S1_at--439--7351Chr01:3475479..3475503 (25 bp)
GTGCAACTCTAGTCGCTCATGTATC
LOC_Os01g07364
Os.50345.1.S1_at--339--7231Chr01:3475468..3475492 (25 bp)
GTCGCTCATGTATCGATTAGCTTAC
LOC_Os01g07364
Os.50345.1.S1_at--719--6551Chr01:3475454..3475478 (25 bp)
GATTAGCTTACTAGTTAATGCTGAC
LOC_Os01g07364
Os.50345.1.S1_at--28--2391Chr01:3475408..3475432 (25 bp)
AAACGATGGATGATTCAGGCTTCAG
LOC_Os01g07364
Os.50345.1.S1_at--197--131Chr01:3475396..3475420 (25 bp)
ATTCAGGCTTCAGGTTTTATGTAAC
LOC_Os01g07364
Os.50345.1.S1_at--566--2531Chr01:3475374..3475398 (25 bp)
AACTAAGCTGGATTTCTACATTTAC
LOC_Os01g07364
Target Sequence 
GACGACCCGCCATGAATGCGGCTCTCCTCGGGCCGCCGGCGGCGTTTTACCCCCACGTGTGGGGGTCAGGTGGTGAAGGA
CACACTCGTCGGCTTCCCACGTCTGTCCTCGCCTCGCCGCCGCCGCCGCTCGCCGGAGCGCCGCCGATTCTCGGCCACCC
TTTGTGTACGTCTCCTACCTCCATAGCCACCGCGTGCAACTCTAGTCGCTCATGTATCGATTAGCTTACTAGTTAATGCT
GACAATTAAAGCGTTGTTGACATGAAACGATGGATGATTCAGGCTTCAGGTTTTATGTAACTAAGCTGGATTTCTACATT
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis