Browse Element(s) Details


Os.50375.1.S1_at

Description gb:AK120935.1
DB_XREF= gi:37990558
TID=Os.50375.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036N03, full insert sequence.
FL= gb:AK120935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4149011/11RNA polymerase Rpb1, domain 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein
LOC_Os04g41490Os.50375.1.S1_at11/114+24374140..24385013RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os04g41500Os.6044.1.S1_at11/114+24392251..24396065expressed protein
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0031047biological_processRNA-mediated gene silencing
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50375.1.S1_at--597--8631Chr04:24384307..24384331 (25 bp)
TGGGTATACCCATGCAACTTGGCAC
LOC_Os04g41490
Os.50375.1.S1_at--355--5151Chr04:24384320..24384344 (25 bp)
GCAACTTGGCACTGGTATTCTCAAA
LOC_Os04g41490
Os.50375.1.S1_at--913--4911Chr04:24384550..24384574 (25 bp)
GCTTGACCATTTGCCTGAATTTAAA
LOC_Os04g41490
Os.50375.1.S1_at--172--251Chr04:24384574..24384598 (25 bp)
ATATCAGCCTGATCCAATATTGGCG
LOC_Os04g41490
Os.50375.1.S1_at--1053--8211Chr04:24384762..24384786 (25 bp)
GGCAAAACTCCCTTTTTTCTGATAG
LOC_Os04g41490
Os.50375.1.S1_at--440--10311Chr04:24384777..24384801 (25 bp)
TTTCTGATAGTCCACCGTATGTTTC
LOC_Os04g41490
Os.50375.1.S1_at--373--1571Chr04:24384877..24384901 (25 bp)
AGCTAGGTGCAGTGTGCCACAGTTT
LOC_Os04g41490
Os.50375.1.S1_at--364--6851Chr04:24384898..24384922 (25 bp)
GTTTGATTAGAATTGGGCCCGCTCA
LOC_Os04g41490
Os.50375.1.S1_at--653--8391Chr04:24384913..24384937 (25 bp)
GGCCCGCTCATTGAACTTTTCTAAA
LOC_Os04g41490
Os.50375.1.S1_at--30--2311Chr04:24384946..24384970 (25 bp)
AAATGGTCCCTGGTCTAATGTCAAA
LOC_Os04g41490
Os.50375.1.S1_at--11--7051Chr04:24384988..24385012 (25 bp)
GTAAATATCACGTCTCTCTTTTGGT
LOC_Os04g41490
Target Sequence 
TGGGTATACCCATGCAACTTGGCACTGGTATTCTCAAAGTCAGACAAAGGCTTGACCATTTGCCTGAATTTAAATATCAG
CCTGATCCAATATTGGCGTGATACAAGCTAGAAGCCTAGAACCAGCTTAATTTGTCTGAAGCTGGAATTCTGTACAGATA
TATAGAGGGGTTGGATGTATAAGCATGTATAAGCATCATATAGCAGGGCAGCTACGGCAACTGTAATTTGAGGCAAGTAT
GCACTGCTGAGGTAGCATTGGGGCAAAACTCCCTTTTTTCTGATAGTCCACCGTATGTTTCAGCTTATTTTGGTTTCAAT
CCCCCAGGTTTATTCTGTTTCCAGAGCAGGATTAGTTTAAAGTTCAAACATATACTAGCTAGGTGCAGTGTGCCACAGTT
TGATTAGAATTGGGCCCGCTCATTGAACTTTTCTAAAGAAGGAAAAAATGGTCCCTGGTCTAATGTCAAAAGCTTGAGCA
GAACAAAGTAAATATCACGTCTCTCTTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis