Browse Element(s) Details


Os.50416.1.S1_at

Description gb:AK121123.1
DB_XREF= gi:37990746
TID=Os.50416.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074J24, full insert sequence.
FL= gb:AK121123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4253011/11ARF-GAP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42480OsAffx.17476.1.S1_x_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480OsAffx.17476.1.S1_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480Os.51366.1.S1_at1/118+26717621..26720200hypothetical protein
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005634cellular_componentnucleus
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0003677molecular_functionDNA binding
GO:0008060molecular_functionARF GTPase activator activity
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50416.1.S1_at--736--9871Chr08:26738989..26739013 (25 bp)
TACAGTGTGCCATCGACGGTGGAAC
LOC_Os08g42530
Os.50416.1.S1_at--205--5531Chr08:26738907..26738931 (25 bp)
GAAAAAGCCCTCACTTCAGTAGCAT
LOC_Os08g42530
Os.50416.1.S1_at--1115--1171Chr08:26738890..26738914 (25 bp)
AGTAGCATTTCTTCTGTGACACAGA
LOC_Os08g42530
Os.50416.1.S1_at--590--5851Chr08:26738867..26738891 (25 bp)
GACCACGCCCGTTGTGAAGTCAAGA
LOC_Os08g42530
Os.50416.1.S1_at--68--2831Chr08:26738851..26738875 (25 bp)
AAGTCAAGAGTAACCCGGCTCCAGG
LOC_Os08g42530
Os.50416.1.S1_at--950--7411Chr08:26738813..26738837 (25 bp)
GTGTTGCTCAATGACCCAAGTTTGT
LOC_Os08g42530
Os.50416.1.S1_at--163--1191Chr08:26738781..26738805 (25 bp)
AGTAGCCTATGGGTTCTTCTGAAGC
LOC_Os08g42530
Os.50416.1.S1_at--890--231Chr08:26738715..26738739 (25 bp)
ATATACCATTTCGTTGCCGGATTCT
LOC_Os08g42530
Os.50416.1.S1_at--923--251Chr08:26738593..26738617 (25 bp)
ATATCGAGTTGCTTCTTTCTCTGTT
LOC_Os08g42530
Os.50416.1.S1_at--827--6931Chr08:26738543..26738567 (25 bp)
GTAGGTCCACTAGTTTCCATGAAGG
LOC_Os08g42530
Os.50416.1.S1_at--1094--3111Chr08:26738439..26738463 (25 bp)
AATTTCGTTCTTGCCTCTACTTTGA
LOC_Os08g42530
Target Sequence 
TACAGTGTGCCATCGACGGTGGAACAAGCGACGACGAGATTCTTGTGTTGTTAGAAGATTATACTAGATAAAATCTGGTG
GGGAAAAAGCCCTCACTTCAGTAGCATTTCTTCTGTGACACAGACCACGCCCGTTGTGAAGTCAAGAGTAACCCGGCTCC
AGGCTTCTCCCAGCTTGTGTTGCTCAATGACCCAAGTTTGTGGCGTGAAGTAGCCTATGGGTTCTTCTGAAGCTTCAGCA
ACATGATGTGCCTGCTCCTTTTCTTCTCCTATATATATACCATTTCGTTGCCGGATTCTCTTAGCGTAGGCTATTCTTAT
TTATATTCATCTTGCAAACGGCTTGGTTTTTGTTTGCAGATGATTCATGCATAGTATGTAAGTTTGTATATCCATCATAT
CGAGTTGCTTCTTTCTCTGTTTTTTTGTATCATCTCAGAACCTGAAGTAGGTCCACTAGTTTCCATGAAGGATGGTTGGA
TGTACATACCGAGATGTGCCATTGTGATTTATTATGGAATGTGAAATATCACCTTTTTGAAAAGGGGGGCAATTTCGTTC
TTGCCTCTACTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis