Browse Element(s) Details


Os.50417.1.S1_at

Description gb:AK121131.1
DB_XREF= gi:37990754
TID=Os.50417.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075F22, full insert sequence.
FL= gb:AK121131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2779011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27740OsAffx.14003.1.S1_at10/114+16210272..16211412hypothetical protein
LOC_Os04g27750NANA4+16214751..16215310expressed protein
LOC_Os04g27760NANA4+16220057..16223444Terpene synthase family, metal binding domain containing protein
LOC_Os04g27770OsAffx.3921.1.S1_x_at11/114+16226562..16227224hypothetical protein
LOC_Os04g27790Os.51227.1.S1_s_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.50417.1.S1_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.51227.1.S1_x_at10/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790OsAffx.30980.1.S1_x_at1/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27800Os.11829.1.S1_at3/114+16239598..16241515expressed protein
LOC_Os04g27810NANA4+16244655..16245116hypothetical protein
LOC_Os04g27820OsAffx.3922.1.S1_at11/114+16249016..16250792hypothetical protein
LOC_Os04g27820Os.57335.1.S1_at1/114+16249016..16250792hypothetical protein
LOC_Os04g27830OsAffx.14006.1.S1_at10/114+16254706..162587351,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative
LOC_Os04g27840OsAffx.14007.1.S1_at10/114+16260055..16261902hypothetical protein
LOC_Os04g27850Os.52050.1.S1_at11/114+16262106..16269126oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50417.1.S1_at--434--7031Chr04:16236957..16236981 (25 bp)
GTAAAAGAAAAACATGGTGCTCAAC
LOC_Os04g27790
Os.50417.1.S1_at--948--2491Chr04:16236967..16236991 (25 bp)
AACATGGTGCTCAACATATGACTAT
LOC_Os04g27790
Os.50417.1.S1_at--69--7791Chr04:16236972..16236996 (25 bp)
GGTGCTCAACATATGACTATATGCT
LOC_Os04g27790
Os.50417.1.S1_at--215--8951Chr04:16236985..16237009 (25 bp)
TGACTATATGCTACTATCCATGATT
LOC_Os04g27790
Os.50417.1.S1_at--761--631Chr04:16236992..16237016 (25 bp)
ATGCTACTATCCATGATTCCCTTAA
LOC_Os04g27790
Os.50417.1.S1_at--253--2031Chr04:16236997..16237021 (25 bp)
ACTATCCATGATTCCCTTAACAACT
LOC_Os04g27790
Os.50417.1.S1_at--945--3511Chr04:16237003..16237027 (25 bp)
CATGATTCCCTTAACAACTACTCTA
LOC_Os04g27790
Os.50417.1.S1_at--130--6591Chr04:16237006..16237030 (25 bp)
GATTCCCTTAACAACTACTCTATAA
LOC_Os04g27790
Os.50417.1.S1_at--757--2531Chr04:16237018..16237042 (25 bp)
AACTACTCTATAACAATGTACTTTA
LOC_Os04g27790
Os.50417.1.S1_at--607--10151Chr04:16237092..16237116 (25 bp)
TATCTTTGACATTCATACAGCGTGG
LOC_Os04g27790
Os.50417.1.S1_at--1027--5671Chr04:16237099..16237123 (25 bp)
GACATTCATACAGCGTGGGAAGAAC
LOC_Os04g27790
Target Sequence 
GTAAAAGAAAAACATGGTGCTCAACATATGACTATATGCTACTATCCATGATTCCCTTAACAACTACTCTATAACAATGT
ACTTTATAACTTTTTACATTGTTAAATTATGGGTGGAAGGTGAGAAATTATAATTTATCTTTGACATTCATACAGCGTGG
GAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis