Browse Element(s) Details


Os.50420.1.S1_s_at

Description gb:AK121142.1
DB_XREF= gi:37990765
TID=Os.50420.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077M04, full insert sequence.
FL= gb:AK121142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0195011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01910OsAffx.26684.1.S1_at10/115+494994..500963BPM, putative, expressed
LOC_Os05g01920NANA5+506831..507046Subtilisin-chymotrypsin inhibitor CI-1B, putative
LOC_Os05g01930OsAffx.30633.1.S1_at1/115+507554..509173hypothetical protein
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50420.1.S1_s_at--334--10191Chr05:520853..520877 (25 bp)
TATATGGTCTAATTCCAGTGTTCCA
LOC_Os05g01950
Os.50420.1.S1_s_at--204--7131Chr05:520859..520883 (25 bp)
GTCTAATTCCAGTGTTCCAAGCCGG
LOC_Os05g01950
Os.50420.1.S1_s_at--110--3191Chr05:520892..520916 (25 bp)
CAATCGCTACTTAAATTCAATGTAC
LOC_Os05g01950
Os.50420.1.S1_s_at--799--131Chr05:520906..520930 (25 bp)
ATTCAATGTACTTGTGTTGCTGAGC
LOC_Os05g01950
Os.50420.1.S1_s_at--418--751Chr05:520911..520935 (25 bp)
ATGTACTTGTGTTGCTGAGCTACTT
LOC_Os05g01950
Os.50420.1.S1_s_at--1025--8671Chr05:520918..520942 (25 bp)
TGTGTTGCTGAGCTACTTTGTCTCT
LOC_Os05g01950
Os.50420.1.S1_s_at--1079--6671Chr05:520921..520945 (25 bp)
GTTGCTGAGCTACTTTGTCTCTGAT
LOC_Os05g01950
Os.50420.1.S1_s_at--754--4751Chr05:520924..520948 (25 bp)
GCTGAGCTACTTTGTCTCTGATATA
LOC_Os05g01950
Os.50420.1.S1_s_at--187--4851Chr05:520929..520953 (25 bp)
GCTACTTTGTCTCTGATATACATAT
LOC_Os05g01950
Os.50420.1.S1_s_at--721--331Chr05:520946..520970 (25 bp)
ATACATATTCATTGTCTCTCGCTGC
LOC_Os05g01950
Os.50420.1.S1_s_at--482--231Chr05:520950..520974 (25 bp)
ATATTCATTGTCTCTCGCTGCTCTT
LOC_Os05g01950
Target Sequence 
TATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTA
CTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50420.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis