Browse Element(s) Details


Os.50432.1.S1_at

Description gb:AK121175.1
DB_XREF= gi:37990798
TID=Os.50432.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082O06, full insert sequence.
FL= gb:AK121175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4047011/11Cytochrome P450 family protein, expressed
LOC_Os04g404605/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed
LOC_Os04g40490Os.56341.1.S1_at11/114+23835790..23839863Cellulase containing protein, expressed
LOC_Os04g40500Os.56341.1.S1_at1/114+23840950..23844414glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os04g40520Os.14920.1.S1_s_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520OsAffx.4037.1.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40510NANA4+23846150..23849402Cellulase containing protein, expressed
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50432.1.S1_at--817--9212Chr04:23830503..23830527 (25 bp)
TCCACGGGAGACGACGGAGCCGTTC
LOC_Os04g40470
Os.50432.1.S1_at--742--1932Chr04:23830468..23830492 (25 bp)
ACGGCGTCGAGATACCGGCCAGGAC
LOC_Os04g40470
Os.50432.1.S1_at--612--1272Chr04:23830459..23830483 (25 bp)
AGATACCGGCCAGGACGCGCGTCGT
LOC_Os04g40470
Os.50432.1.S1_at--538--7211Chr04:23830436..23830460 (25 bp)
GTCGTCAACGCGATGGCGATACACA
LOC_Os04g40470
Os.50432.1.S1_at--651--6192Chr04:23830425..23830449 (25 bp)
GATGGCGATACACACGGACCCCGGC
LOC_Os04g40470
Os.50432.1.S1_at--854--4691Chr04:23830167..23830191 (25 bp)
GCTGGCGGTGCACAAGAAGAACCCT
LOC_Os04g40470
Os.50432.1.S1_at--772--2732Chr04:23830154..23830178 (25 bp)
AAGAAGAACCCTCTCGTGCTCATCG
LOC_Os04g40470
Os.50432.1.S1_at--503--2471Chr04:23830112..23830136 (25 bp)
AACACAGGTGGCCATTGACGACGCA
LOC_Os04g40470
Os.50432.1.S1_at--1016--8431Chr04:23830103..23830127 (25 bp)
GGCCATTGACGACGCAGACATGTAA
LOC_Os04g40470
Os.50432.1.S1_at--432--5651Chr04:23830087..23830111 (25 bp)
GACATGTAACCTTGCTGGTAGGGTA
LOC_Os04g40470
Os.50432.1.S1_at--727--6031Chr04:23829992..23830016 (25 bp)
GAGATACTTTCTCAAGGGTTATAAA
LOC_Os04g40470
Target Sequence 
TCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGA
TGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGAC
GGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCGCTTCGC
GGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACG
TGGAGGAGGAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGGAACACAGGT
GGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTATCAGAAGGTACATACAACATGTGTAAAAGGTAC
ATACAACATGTGCAAAAGGTATTATTATCTTGAGATACTTTCTCAAGGGTTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis