Browse Element(s) Details


Os.50513.1.S1_at

Description gb:AK121554.1
DB_XREF= gi:37991177
TID=Os.50513.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G12, full insert sequence.
FL= gb:AK121554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2724011/11oxidoreductase, FAD/FMN-binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA
LOC_Os01g27230Os.27098.2.A1_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27230Os.27098.2.A1_s_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27240Os.50513.1.S1_at11/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27240Os.27098.2.A1_s_at1/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27250Os.35344.3.S1_x_at11/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_x_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.1.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250Os.35344.18.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.3.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_at8/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.31552.2.S1_at1/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27260OsAffx.23414.1.S1_at11/111+15543923..15544818glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27270OsAffx.10222.1.S1_x_at2/111+15546761..15548536Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50513.1.S1_at--654--6391Chr01:15520289..15520313 (25 bp)
GATCGGCGTCATGAACGGCCTCGGC
LOC_Os01g27240
Os.50513.1.S1_at--178--4411Chr01:15520254..15520278 (25 bp)
GCCACGTGATCGAGCCGAGGTGCAT
LOC_Os01g27240
Os.50513.1.S1_at--814--8671Chr01:15520178..15520202 (25 bp)
TGCTCCCGTTCAGAAGGGCGTTCCA
LOC_Os01g27240
Os.50513.1.S1_at--317--6971Chr01:15520072..15520096 (25 bp)
GTACGGGAGATTGTTCCTGGCCAAC
LOC_Os01g27240
Os.50513.1.S1_at--743--5031Chr01:15520024..15520048 (25 bp)
GCAGAAGGCGGCTCTGAACGCGTAT
LOC_Os01g27240
Os.50513.1.S1_at--355--8971Chr01:15520010..15520034 (25 bp)
TGAACGCGTATGACAGGAGCACCTT
LOC_Os01g27240
Os.50513.1.S1_at--1087--9571Chr01:15519943..15519967 (25 bp)
TCTTGAGCAGCCTCTAGCTGTTTGA
LOC_Os01g27240
Os.50513.1.S1_at--63--10791Chr01:15519922..15519946 (25 bp)
TTGATTGATTCGACTGACCCATCTG
LOC_Os01g27240
Os.50513.1.S1_at--730--5811Chr01:15519907..15519931 (25 bp)
GACCCATCTGTTGATACTATGGTCA
LOC_Os01g27240
Os.50513.1.S1_at--112--4871Chr01:15519853..15519877 (25 bp)
GCTAGTTTGTGGTCGACCTTACGAA
LOC_Os01g27240
Os.50513.1.S1_at--840--8131Chr01:15519814..15519838 (25 bp)
GGACATGCATGTTACGCTACTTTGT
LOC_Os01g27240
Target Sequence 
GATCGGCGTCATGAACGGCCTCGGCGTCCTCTACTGCCACGTGATCGAGCCGAGGTGCATGCGTGAGCAGCATCGAGGAG
CACCGCGCGCGCCGCAACGTCCCGCACCGCCTGCTCCCGTTCAGAAGGGCGTTCCACGGCACGTTCATTGTGAACGGAGG
GTACGACCGGGAGGAAGGGGACAAGGCGGTCGGCGACGGCTACGCCGACCTGGTGTCGTACGGGAGATTGTTCCTGGCCA
ACCCCGACCTGCCGGAGAGGTTCAGGCAGAAGGCGGCTCTGAACGCGTATGACAGGAGCACCTTCTACACGCCTGATCCT
GTGGTGGGCTACACGGACTACCCGTTTCTTGAGCAGCCTCTAGCTGTTTGATTGATTCGACTGACCCATCTGTTGATACT
ATGGTCAAAGTTGGTGCAAGTCAGCAATAAATTAAAGCTAGTTTGTGGTCGACCTTACGAATAAAATGGAGTGGTGGACA
TGCATGTTACGCTACTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis