Browse Element(s) Details


Os.50601.1.S1_x_at

Description gb:AK122014.1
DB_XREF= gi:37991637
TID=Os.50601.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111J15, full insert sequence.
FL= gb:AK122014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4749011/11Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative
LOC_Os07g47480Os.7607.1.S1_at11/117+28380891..28382430heavy metal-associated domain containing protein, expressed
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50601.1.S1_x_at--660--3811Chr07:28394766..28394790 (25 bp)
CTGCCTTCAAGAGACATGTTCCTGT
LOC_Os07g47490
Os.50601.1.S1_x_at--1066--8912Chr09:588308..588327 (20 bp)
TGAGCCAAGATTGATGCCGTCCATC
NONE
Os.50601.1.S1_x_at--767--7191Chr07:28393007..28393031 (25 bp)
GTCGAACCTACCTCTATAGTCTGAT
LOC_Os07g47490
Os.50601.1.S1_x_at--134--1571Chr07:28392160..28392184 (25 bp)
AGCTATGTACCTTCTCTTTGTGAAA
LOC_Os07g47490
Os.50601.1.S1_x_at--565--8511Chr07:28392115..28392139 (25 bp)
TGGAATTCCAGTTCGATCAGTCCTC
LOC_Os07g47490
Os.50601.1.S1_x_at--958--6431Chr07:28392101..28392125 (25 bp)
GATCAGTCCTCACTAGCTACTATAA
LOC_Os07g47490
Os.50601.1.S1_x_at--28--9251Chr07:28392065..28392089 (25 bp)
TCCTTCACCGCAAACACGATTTATA
LOC_Os07g47490
Os.50601.1.S1_x_at--296--711Chr07:28392020..28392044 (25 bp)
ATGAGGTCATTCTTTGCCCTGATAG
LOC_Os07g47490
Os.50601.1.S1_x_at--362--2611Chr07:28391954..28391978 (25 bp)
AACGCCAGCATGTTCTTCGTATCGG
LOC_Os07g47490
Os.50601.1.S1_x_at--70--6431Chr07:28391903..28391927 (25 bp)
GATCTATCAGCTTCCTTGAGCAGCA
LOC_Os07g47490
Os.50601.1.S1_x_at--914--1511Chr07:28391885..28391909 (25 bp)
AGCAGCATTGGCGTGACCTTGTCAA
LOC_Os07g47490
Target Sequence 
CTGCCTTCAAGAGACATGTTCCTGTAGTAACATATGATAAGGTACATCCATACATTCTCAGGATTGCAACTGGTGAGGAA
TCTTCAATTTTATGTGGAGAATATATCTTGGAGCTGCTTAGAAGCTCGGGGACTTCTCGAGGTGAGCCAAGATTGATGCC
GTCCATCTTAAAGGATCTTGACCGTCGAACCTACCTCTATAGTCTGATCATGCCTATCATGAACAAGTATATATCAGGCC
TTGGTGAGGGGAAAGCTATGTACCTTCTCTTTGTGAAAGCTGAAACACTGACAGATTCTGGAATTCCAGTTCGATCAGTC
CTCACTAGCTACTATAAGAGCCCTCATTTCCTTCACCGCAAACACGATTTATACAACAACTATACCAGTCCTGATGAGGT
CATTCTTTGCCCTGATAGCCAGCAGAGCATGTACTGCCAGCTGCTCTGTGGCCTGGTAGAACGCCAGCATGTTCTTCGTA
TCGGGGCAGTCTTTGCCTCAGCATTCCTTCGATCTATCAGCTTCCTTGAGCAGCATTGGCGTGACCTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50601.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis