Browse Element(s) Details


Os.5064.1.S1_at

Description gb:AK062718.1
DB_XREF= gi:32972736
TID=Os.5064.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C11, full insert sequence.
FL= gb:AK062718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0644011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5064.1.S1_at--170--2871Chr05:3285251..3285275 (25 bp)
AAGGCGACCTATATGTAACTTTCGA
LOC_Os05g06440
Os.5064.1.S1_at--550--111Chr05:3285328..3285352 (25 bp)
ATTCTCACATAACCGAAGGCCCAGG
LOC_Os05g06440
Os.5064.1.S1_at--785--5011Chr05:3285342..3285366 (25 bp)
GAAGGCCCAGGTTTTCGCTTTTATG
LOC_Os05g06440
Os.5064.1.S1_at--2--10311Chr05:3285354..3285378 (25 bp)
TTTCGCTTTTATGCTGCAGCTAGTT
LOC_Os05g06440
Os.5064.1.S1_at--1082--5051Chr05:3285369..3285393 (25 bp)
GCAGCTAGTTCGTTCTCATTTGAGG
LOC_Os05g06440
Os.5064.1.S1_at--1031--931Chr05:3285418..3285442 (25 bp)
AGGAAATTTTCCCAGCTTACAAGCA
LOC_Os05g06440
Os.5064.1.S1_at--246--5071Chr05:3285446..3285470 (25 bp)
GCAGCTGCCTTTTCTGTGGGTGTGA
LOC_Os05g06440
Os.5064.1.S1_at--401--5031Chr05:3285491..3285515 (25 bp)
GCAGTTCAGCAGTTTAATTTCTCTT
LOC_Os05g06440
Os.5064.1.S1_at--470--3491Chr05:3285534..3285558 (25 bp)
CATGTCATTAACAACCGGGTGTAGC
LOC_Os05g06440
Os.5064.1.S1_at--179--5211Chr05:3285628..3285652 (25 bp)
GAATTGTAGCTTACACTTCCCAAAA
LOC_Os05g06440
Os.5064.1.S1_at--1043--10311Chr05:3285699..3285723 (25 bp)
TTTAAGTCAGGGTCATTCGTTGTCC
LOC_Os05g06440
Target Sequence 
AAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATT
CTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCC
TCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTA
GCAGTTCAGCAGTTTAATTTCTCTTTTACCTTNTTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTT
GGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAA
AAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAGGGTCATTCGTTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis