Browse Element(s) Details

Os.50821.1.S1_at

Description

gb:AK058781.1
DB_XREF= gi:32968799
TID=Os.50821.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-C10, full insert sequence.
FL= gb:AK058781.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46754	10/11	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g28820	1/11	squalene/oxidosqualene cyclases family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46690	Os.24341.1.A1_at	4/11	6	+	28362871..28367050	Exostosin family protein, expressed
LOC_Os06g46690	Os.5303.1.S2_at	2/11	6	+	28362871..28367050	Exostosin family protein, expressed
LOC_Os06g46700	Os.5303.1.S1_at	4/11	6	+	28367889..28370714	expressed protein
LOC_Os06g46710	NA	NA	6	+	28372190..28375724	retrotransposon protein, putative, unclassified
LOC_Os06g46720	Os.51429.1.S1_at	11/11	6	+	28376095..28381491	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730	OsAffx.28138.1.S1_at	11/11	6	+	28382667..28384807	hypothetical protein
LOC_Os06g46740	Os.55380.1.S1_at	11/11	6	+	28387377..28388576	Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754	Os.50821.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	Os.57130.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	OsAffx.28139.1.S1_at	3/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46770	Os.10139.1.S1_s_at	11/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770	Os.57479.1.S1_x_at	3/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770	Os.25748.1.S1_x_at	1/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780	OsAffx.15958.1.S1_at	9/11	6	+	28405288..28406220	Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46799	Os.53303.1.S1_at	11/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799	Os.5843.1.S1_at	11/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799	Os.23700.1.A1_at	1/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000902	biological_process	cellular morphogenesis
GO:0009860	biological_process	pollen tube growth
GO:0010215	biological_process	cellulose microfibril organization
GO:0019745	biological_process	pentacyclic triterpenoid biosynthesis
GO:0031122	biological_process	cytoplasmic microtubule organization and biogenesis
GO:0005737	cellular_component	cytoplasm
GO:0010005	cellular_component	cortical microtubule (sensu Viridiplantae)
GO:0016324	cellular_component	apical plasma membrane
GO:0005515	molecular_function	protein binding
GO:0016871	molecular_function	cycloartenol synthase activity
GO:0042299	molecular_function	lupeol synthase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50821.1.S1_at--808--259	1	Chr06:28393755..28393779 (25 bp)	AACGACCCTGATGTAGCCTGCAAGA	LOC_Os06g46754
Os.50821.1.S1_at--1037--571	1	Chr06:28393730..28393754 (25 bp)	GACTGCATATCTCTTCTGAAACTTT	LOC_Os06g46754
Os.50821.1.S1_at--171--975	1	Chr06:28393659..28393683 (25 bp)	TAATCTTCTCTAGTTGGTGGTCCCA	LOC_Os06g46754
Os.50821.1.S1_at--184--725	1	Chr06:28393640..28393664 (25 bp)	GTCCCATGTGGTCAGAGGTGTCTCT	LOC_Os06g46754
Os.50821.1.S1_at--650--389	1	Chr06:28393590..28393614 (25 bp)	CTGTGATTATCTTAGTGGCCTGGGA	LOC_Os06g46754
Os.50821.1.S1_at--153--853	1	Chr06:28393561..28393585 (25 bp)	TGGAAACACCGGAATGACTGCATCT	LOC_Os06g46754
Os.50821.1.S1_at--1113--35	1	NONE	ATAATGCCACACCTAGTACTGCTGC	NONE
Os.50821.1.S1_at--572--991	1	Chr06:28393517..28393541 (25 bp)	TACTGCTGCCGTATTGGATGCTTTG	LOC_Os06g46754
Os.50821.1.S1_at--1091--135	2	Chr06:28393456..28393480 (25 bp)	AGAGCTCTTCATGAACTCTTGGCCC	LOC_Os06g46754
Os.50821.1.S1_at--408--417	1	Chr06:28393383..28393407 (25 bp)	CGCCTCGGCGATGTTTTTGTGTTTT	LOC_Os06g46754
Os.50821.1.S1_at--408--899	1	Chr06:28393330..28393354 (25 bp)	TGAAGCACTCTGCTGTACATACCTT	LOC_Os06g46754

Target Sequence

AACGACCCTGATGTAGCCTGCAAGAGACTGCATATCTCTTCTGAAACTTTGAAAATATAAAAATATATTGCAGAATAAGA
GCTTTGCTGTGATGACTAATCTTCTCTAGTTGGTGGTCCCATGTGGTCAGAGGTGTCTCTAAGGAAGCTAAGAAAGAGCT
GAACTCTGTGATTATCTTAGTGGCCTGGGAAATTTGGAAACACCGGAATGACTGCATCTTCAATAATGCCACACCTAGTA
CTGCTGCCGTATTGGATGCTTTGGCAAGGGAGAGTTTATTATTGTGTACTGCTGGGGCAAGAGCTCTTCATGAACTCTTG
GCCCGGTCGCTCTCCACCTAGGAGCTTAGCTCCTGCGGGAGTTGTTGCGCATCGCCTCGGCGATGTTTTTGTGTTTTTCT
CTTCTTTTTTCAGAGTGTTCCTTTGTGAAGCACTCTGCTGTACATACCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis