Browse Element(s) Details


Os.50851.1.S1_at

Description gb:AK058982.1
DB_XREF= gi:32969000
TID=Os.50851.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E01, full insert sequence.
FL= gb:AK101196.1 gb:AK058982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4803011/11Anti-silencing protein 1, putative, expressed
LOC_Os08g097906/11hypothetical protein
LOC_Os07g079741/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os05g48060Os.54269.1.S1_s_at11/115+27469321..27474965Phosphatidyl serine synthase family protein, expressed
LOC_Os05g48070Os.9498.1.S1_at11/115+27475473..27479753expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50851.1.S1_at--950--8994Chr08:5654500..5654524 (25 bp)
TGAAGGTCCTTCATCTCGTCATCAT
LOC_Os08g09790
Os.50851.1.S1_at--327--412Chr08:5654520..5654544 (25 bp)
ATCATCACCGTCTCTGAATCAGTGA
LOC_Os08g09790
Os.50851.1.S1_at--1093--5292Chr08:5654565..5654589 (25 bp)
GAAGGCTTTTGGTACTAAGGGCTGA
LOC_Os08g09790
Os.50851.1.S1_at--1153--2932Chr08:5654603..5654627 (25 bp)
AAGGCTCGAGGTCTACTTCATTGAG
LOC_Os08g09790
Os.50851.1.S1_at--424--7952Chr08:5654627..5654651 (25 bp)
GGATAGGATGGTTTTCTCTTCTTCT
LOC_Os08g09790
Os.50851.1.S1_at--138--1373Chr08:5654662..5654686 (25 bp)
AGAGCAATGCTTCGACAACATCTTC
LOC_Os08g09790
Os.50851.1.S1_at--71--10091Chr05:27456084..27456108 (25 bp)
TAGGCCAAGAGAACCCATTATTAGT
LOC_Os05g48030
Os.50851.1.S1_at--1000--7791Chr05:27456113..27456137 (25 bp)
GGTCCTGTGTTTGTGGTCTAGATTA
LOC_Os05g48030
Os.50851.1.S1_at--983--9791Chr05:27456141..27456165 (25 bp)
TAACTAACCGGAATCCTTTTGCGCA
LOC_Os05g48030
Os.50851.1.S1_at--291--4311Chr05:27456155..27456179 (25 bp)
CCTTTTGCGCACTTCTGCAAGTTAA
LOC_Os05g48030
Os.50851.1.S1_at--820--9271Chr05:27456189..27456213 (25 bp)
TCCGTAAGCGGGATGCTTGTTCAGC
LOC_Os05g48030
Target Sequence 
TGAAGGTCCTTCATCTCGTCATCATCACCGTCTCTGAATCAGTGAAGAGCCAAAGAACAGTTTGTGAAGGCTTTTGGTAC
TAAGGGCTGAAGAACAGTTTGTGAAGGCTCGAGGTCTACTTCATTGAGGATAGGATGGTTTTCTCTTCTTCTAATTCATT
CAAGAGCAATGCTTCGACAACATCTTCAAACATGGACTTTGTATTTATAGTAGTGTGTCATTTATCTTGTGTTTAGTTTC
AAATGCAATGCTATTGTATACACATTGCATTTGAGCAGGGGTGTTGAGTATTATGTGTTTAGGGGTATATTAGTAATTTC
CTATCTCTATTGTACTCATATATGCCCTTTGGGCTAACACAATAGCAACTGTTCATTCTCCAATTTCCCCTAAATTGTGA
CAATAGGGTATGATCCGGAAACAATAGGCCAAGAGAACCCATTATTAGTCATGGGTCCTGTGTTTGTGGTCTAGATTACT
GTAACTAACCGGAATCCTTTTGCGCACTTCTGCAAGTTAAATGGTATGATCCGTAAGCGGGATGCTTGTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis