Browse Element(s) Details


Os.50857.1.S1_at

Description gb:AK059033.1
DB_XREF= gi:32969051
TID=Os.50857.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C06, full insert sequence.
FL= gb:AK059033.1 gb:AK065633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6269011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50857.1.S1_at--660--6391Chr03:35414642..35414666 (25 bp)
GATCGATCAGTACAGCTTCACGCCA
LOC_Os03g62690
Os.50857.1.S1_at--58--10571Chr03:35414672..35414696 (25 bp)
TTCTCACTACGCTTGCATGATCGAC
LOC_Os03g62690
Os.50857.1.S1_at--776--3491Chr03:35414687..35414711 (25 bp)
CATGATCGACATGCTGGGCCGAAAC
LOC_Os03g62690
Os.50857.1.S1_at--664--5531Chr03:35414707..35414731 (25 bp)
GAAACGGCAGATTCGACGAGGCACT
LOC_Os03g62690
Os.50857.1.S1_at--67--6211Chr03:35414724..35414748 (25 bp)
GAGGCACTGCGCATGATCAATGACA
LOC_Os03g62690
Os.50857.1.S1_at--901--2991Chr03:35414742..35414766 (25 bp)
AATGACATGCCCTTCGAGCCTGATG
LOC_Os03g62690
Os.50857.1.S1_at--436--5371Chr03:35414777..35414801 (25 bp)
GAAGACGCTGCTGGCATCTTGCAAG
LOC_Os03g62690
Os.50857.1.S1_at--1099--5891Chr03:35414850..35414874 (25 bp)
GAGCTTTCAGACAGAGACTCCGCGA
LOC_Os03g62690
Os.50857.1.S1_at--773--2591Chr03:35415000..35415024 (25 bp)
AACGAGGTGCATACGTTTGCTTCAA
LOC_Os03g62690
Os.50857.1.S1_at--128--9691Chr03:35415035..35415059 (25 bp)
TCACCCGAACTCTGATTCCATATAT
LOC_Os03g62690
Os.50857.1.S1_at--725--10091Chr03:35415067..35415091 (25 bp)
TAGGAGAGCTTGTTGCCGTGATGCA
LOC_Os03g62690
Target Sequence 
GATCGATCAGTACAGCTTCACGCCAGCACCTTCTCACTACGCTTGCATGATCGACATGCTGGGCCGAAACGGCAGATTCG
ACGAGGCACTGCGCATGATCAATGACATGCCCTTCGAGCCTGATGCCCTGATATGGAAGACGCTGCTGGCATCTTGCAAG
CTGCACAGGAATCTGGACATAGGGAAGCTTGCTGCAGACAGGCTGATGGAGCTTTCAGACAGAGACTCCGCGAGCTACGT
GCTGATGTCGAACATCTACGCCATGCACGGAGAATGGGAGGACGCCAGGAAGGTGAGGAGGAGGATGGACGAGACCGGCG
TCAAGAAGGACGCCGGCTGCAGCTGGATTGAGATCAACAACGAGGTGCATACGTTTGCTTCAAGAGACATGTCTCACCCG
AACTCTGATTCCATATATCAGATGCTAGGAGAGCTTGTTGCCGTGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis