Browse Element(s) Details


Os.50867.1.S1_at

Description gb:AK059087.1
DB_XREF= gi:32969105
TID=Os.50867.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B06, full insert sequence.
FL= gb:AK059087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5248011/11senescence/dehydration-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009644biological_processresponse to high light intensity
GO:0009651biological_processresponse to salt stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50867.1.S1_at--748--8451Chr01:30483658..30483678 (21 bp)
TGGCCTCGCTTGATGCTATCAATAA
LOC_Os01g52480
Os.50867.1.S1_at--408--8891Chr01:30483854..30483878 (25 bp)
TGAGAGGAGGTCACTCGCTGCCACA
LOC_Os01g52480
Os.50867.1.S1_at--745--3531Chr01:30483877..30483901 (25 bp)
CATCCAATGTTGTCTCTGGTGCAGT
LOC_Os01g52480
Os.50867.1.S1_at--946--5731Chr01:30484152..30484176 (25 bp)
GACGGCCTGGAACCTCTTCAAGATA
LOC_Os01g52480
Os.50867.1.S1_at--581--2651Chr01:30484294..30484318 (25 bp)
AAGCCACCTCGAGTGTGTCGCGTAG
LOC_Os01g52480
Os.50867.1.S1_at--973--7451Chr01:30484308..30484332 (25 bp)
GTGTCGCGTAGGCTGATCATGTACT
LOC_Os01g52480
Os.50867.1.S1_at--65--7011Chr01:30484328..30484352 (25 bp)
GTACTGCCAAGTTAAACTCTCCTGC
LOC_Os01g52480
Os.50867.1.S1_at--844--4451Chr01:30484351..30484375 (25 bp)
GCCTCTTGCATGTTCAGTTGTTCAC
LOC_Os01g52480
Os.50867.1.S1_at--363--7591Chr01:30484394..30484418 (25 bp)
GGGCATACCAACATTACACCTTAAG
LOC_Os01g52480
Os.50867.1.S1_at--885--7051Chr01:30484438..30484462 (25 bp)
GTAACCTGTGTTGAGCTGCTAAAGA
LOC_Os01g52480
Os.50867.1.S1_at--947--91Chr01:30484464..30484488 (25 bp)
ATTCCCATTTGTGAGTGCTTGCTAC
LOC_Os01g52480
Target Sequence 
TGGCCTCGCTTGATGCTATCAATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCACATCCAAT
GTTGTCTCTGGTGCAGTGTCAAGAAGGTATGGAGAGAGCGCAGGGGAGGCGACGGAGGATGCGTTCGCGACGGCCGGCCA
CGCCGTGGGGACGGCCTGGAACCTCTTCAAGATACGGAAGGCCGTCACGCCGTCGTCCTCCCTCCCAGGGAACATGGTGA
AGAGCGCCGTCAGGAACAGAAAATGACGGCCCGCCCGTCTTGCAACTGCAGAGAACAGCGGCGTGTGCTACAAGCCACCT
CGAGTGTGTCGCGTAGGCTGATCATGTACTGCCAAGTTAAACTCTCCTGCCTCTTGCATGTTCAGTTGTTCACTACCTGA
TGAAGTAATCAGGGCATACCAACATTACACCTTAAGTACTATACAAAATGTCTCAGTAACCTGTGTTGAGCTGCTAAAGA
TATTCCCATTTGTGAGTGCTTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis