Browse Element(s) Details


Os.50878.1.S1_at

Description gb:AK102394.1
DB_XREF= gi:32987603
TID=Os.50878.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092F19, full insert sequence.
FL= gb:AK102394.1 gb:AK059156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0425011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50878.1.S1_at--1009--3311Chr01:1876113..1876137 (25 bp)
CACTTCTCTGAGGTTGTCCAACATG
LOC_Os01g04250
Os.50878.1.S1_at--868--7931Chr01:1876153..1876177 (25 bp)
GGATTATCAATTGGGCTATTCTTTT
LOC_Os01g04250
Os.50878.1.S1_at--444--5171Chr01:1876187..1876211 (25 bp)
GCAAGCTGTATGTTCACCAAGGATT
LOC_Os01g04250
Os.50878.1.S1_at--1054--9211Chr01:1876232..1876256 (25 bp)
TCCAGGTGGTGGTAAACTTTTCATA
LOC_Os01g04250
Os.50878.1.S1_at--318--2531Chr01:1876246..1876270 (25 bp)
AACTTTTCATAGCTTCAGGCTGCCG
LOC_Os01g04250
Os.50878.1.S1_at--99--5331Chr01:1876394..1876418 (25 bp)
GAAGGGATGCTGCACTCTCAGGAAA
LOC_Os01g04250
Os.50878.1.S1_at--702--1271Chr01:1876432..1876456 (25 bp)
AGATCAAACATGCATCGGCGGCTTC
LOC_Os01g04250
Os.50878.1.S1_at--410--6752Chr06:13045618..13045642 (25 bp)
GTTCAGGCTGAACCTTGTCGATCTT
NONE
Os.50878.1.S1_at--849--9892Chr01:1876536..1876560 (25 bp)
TACTATCTCTACTGCAGCTACTAGG
LOC_Os01g04250
Os.50878.1.S1_at--857--4631Chr01:1876609..1876633 (25 bp)
GCTCTAGTCAAACACTTCCAAGTTG
LOC_Os01g04250
Os.50878.1.S1_at--514--5471Chr01:1876640..1876664 (25 bp)
GAACTACCGTTGTTTGATTCTAGTG
LOC_Os01g04250
Target Sequence 
CACTTCTCTGAGGTTGTCCAACATGCAATTTGTATTGGATGGATTATCAATTGGGCTATTCTTTTTTGGATGGAGCAAGC
TGTATGTTCACCAAGGATTATTTTGCAAATGCCATGGGATCCAGGTGGTGGTAAACTTTTCATAGCTTCAGGCTGCCGGC
TTGGGGACAAGCCGGATTCAAAGGAAGGGGTATTGTTAGGAATTGGGCCGGCTGCACTACGACCCAACACAGTGAGTAGC
CCAATCCTTGGCCCAAGCAAGCCCAACAGAGAGCTAGAAAGGAAGGGATGCTGCACTCTCAGGAAAAGGAATAGAACAGA
GATCAAACATGCATCGGCGGCTTCGGCCACGACGGCGGCGGCGGCGACTTGGTTCAGGCTGAACCTTGTCGATCTTCCTC
TCTTCCTCTACTACCTCTCTTGCTACTATCTCTACTGCAGCTACTAGGGCAATCCAGTCTCTCTATTAGCTTGTATCCCT
ATTATTATTCTACCTTGCTCTAGTCAAACACTTCCAAGTTGTATTGAGAACTACCGTTGTTTGATTCTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis