Browse Element(s) Details


Os.50896.1.S1_at

Description gb:AK059325.1
DB_XREF= gi:32969343
TID=Os.50896.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence.
FL= gb:AK059325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6601011/11amino acid carrier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50896.1.S1_at--309--4651Chr01:38637953..38637977 (25 bp)
GCAGGGTGAACCTGTTCCGGTCGAC
LOC_Os01g66010
Os.50896.1.S1_at--33--8711Chr01:38637758..38637782 (25 bp)
TGTGCCTGCAGATGCTCAGCGTCGG
LOC_Os01g66010
Os.50896.1.S1_at--76--4491Chr01:38637693..38637717 (25 bp)
GCCGGCGTCATGTCGGATCTCAAGG
LOC_Os01g66010
Os.50896.1.S1_at--709--6411Chr01:38637678..38637702 (25 bp)
GATCTCAAGGTTTACCGCCCGTTCA
LOC_Os01g66010
Os.50896.1.S1_at--1090--4391Chr01:38637662..38637686 (25 bp)
GCCCGTTCAAGGGTTACTGATAACT
LOC_Os01g66010
Os.50896.1.S1_at--980--6391Chr01:38637637..38637661 (25 bp)
GATCGGATCACGTACGCACCCAGAA
LOC_Os01g66010
Os.50896.1.S1_at--443--371Chr01:38637597..38637621 (25 bp)
ATCAAAATTGCCCTTCTCGTAGAAG
LOC_Os01g66010
Os.50896.1.S1_at--838--8151Chr01:38637573..38637597 (25 bp)
GGAAAACCAAATTCACTTCACACGA
LOC_Os01g66010
Os.50896.1.S1_at--134--10511Chr01:38637562..38637586 (25 bp)
TTCACTTCACACGATTAAACCCAAA
LOC_Os01g66010
Os.50896.1.S1_at--1074--5011Chr01:38637523..38637547 (25 bp)
GCAGTGATCAGACGCTAAGGGAAAA
LOC_Os01g66010
Os.50896.1.S1_at--1114--7291Chr01:38637488..38637512 (25 bp)
GTGCGTGTCACTGTTGATGTACTGT
LOC_Os01g66010
Target Sequence 
GCAGGGTGAACCTGTTCCGGTCGACGTGGCGCACGGCGTTCGTCGTCGCCACCACGGTGGTGTCCATGCTGCTGCCCTTC
TTCAACGACGTGGTCGGCTTCCTCGGCGCGCTCGGATTCTGGCCGCTCACCGTCTACTTCCCCGTGGAGATGTACGTGGT
GCAGAAGAAGGTGCCACGGTGGAGCACACGGTGGGTGTGCCTGCAGATGCTCAGCGTCGGCTGCCTCGTCATCTCCATCG
CCGCCGCCGCGGGCTCCATCGCCGGCGTCATGTCGGATCTCAAGGTTTACCGCCCGTTCAAGGGTTACTGATAACTGATC
GGATCACGTACGCACCCAGAACGACACGTCAAAAAAAATCAAAATTGCCCTTCTCGTAGAAGGAAAACCAAATTCACTTC
ACACGATTAAACCCAAAACGAAAAAAAAGGAGCAGTGATCAGACGCTAAGGGAAAAAAAAGTGTAAGTGCGTGTCACTGT
TGATGTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis