Browse Element(s) Details


Os.50936.1.S1_at

Description gb:AK059573.1
DB_XREF= gi:32969591
TID=Os.50936.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full insert sequence.
FL= gb:AK059573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g305409/11ubiquitin-specific protease 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50936.1.S1_at--1161--10311Chr12:18312592..18312616 (25 bp)
TTTCATACGGCCTACGCTATCAGAC
LOC_Os12g30540
Os.50936.1.S1_at--733--9591Chr12:18312594..18312618 (25 bp)
TCATACGGCCTACGCTATCAGACCA
LOC_Os12g30540
Os.50936.1.S1_at--983--311Chr12:18312596..18312620 (25 bp)
ATACGGCCTACGCTATCAGACCAGT
LOC_Os12g30540
Os.50936.1.S1_at--310--9931Chr12:18312597..18312621 (25 bp)
TACGGCCTACGCTATCAGACCAGTG
LOC_Os12g30540
Os.50936.1.S1_at--198--1951Chr12:18312598..18312622 (25 bp)
ACGGCCTACGCTATCAGACCAGTGG
LOC_Os12g30540
Os.50936.1.S1_at--220--8431Chr12:18312600..18312623 (24 bp)
GGCCTACGCTATCAGACCAGTGGTA
LOC_Os12g30540
Os.50936.1.S1_at--380--4431NONE
GCCTACGCTATCAGACCAGTGGTAT
NONE
Os.50936.1.S1_at--1094--4291Chr12:18312602..18312623 (22 bp)
CCTACGCTATCAGACCAGTGGTATA
LOC_Os12g30540
Os.50936.1.S1_at--100--3731Chr12:18312603..18312623 (21 bp)
CTACGCTATCAGACCAGTGGTATAA
LOC_Os12g30540
Os.50936.1.S1_at--163--9951Chr12:18312604..18312623 (20 bp)
TACGCTATCAGACCAGTGGTATAAA
LOC_Os12g30540
Os.50936.1.S1_at--710--4871NONE
GCTATCAGACCAGTGGTATAAATTT
NONE
Target Sequence 
TTTCATACGGCCTACGCTATCAGACCAGTGGTATAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis