Browse Element(s) Details


Os.5096.1.S1_at

Description gb:AK103260.1
DB_XREF= gi:32988469
TID=Os.5096.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124C12, full insert sequence.
FL= gb:AK103260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g029409/11succinate dehydrogenase subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5096.1.S1_at--353--6971Chr02:1153749..1153773 (25 bp)
GTAGCTCAGGCTCATCTTTCAGCAG
LOC_Os02g02940
Os.5096.1.S1_at--140--4191Chr02:1153833..1153857 (25 bp)
CCCTAGGAGCTGTGCGGCCAAAGAT
LOC_Os02g02940
Os.5096.1.S1_at--947--2151Chr02:1153954..1153978 (25 bp)
ACAGCTGAGTGCTACATTCTCTATC
LOC_Os02g02940
Os.5096.1.S1_at--111--9531Chr02:1153971..1153995 (25 bp)
TCTCTATCTCGCACCGTATATTTGG
LOC_Os02g02940
Os.5096.1.S1_at--942--10191Chr02:1153987..1154011 (25 bp)
TATATTTGGTGCTGCGTTGGGTGCT
LOC_Os02g02940
Os.5096.1.S1_at--1033--191Chr02:1154105..1154129 (25 bp)
ATTTCTGTGACTATCTCAGCATCTG
LOC_Os02g02940
Os.5096.1.S1_at--287--10751Chr02:1154138..1154162 (25 bp)
TTGCAATGCAACTGTAGCTGCCGTT
LOC_Os02g02940
Os.5096.1.S1_at--617--3111Chr02:1154168..1154192 (25 bp)
AATATCTTTGCTGTGCTTGTAGACT
LOC_Os02g02940
Os.5096.1.S1_at--926--9011Chr02:1154213..1154237 (25 bp)
TGCAATGACCATACTCCCTGTGAGA
LOC_Os02g02940
Os.5096.1.S1_at--914--10591Chr02:1154282..1154306 (24 bp)
TTCTGCTGCCTTGTGGATTCCATGT
NONE
Os.5096.1.S1_at--237--6591NONE
GATTCCATGTTCATTTTGTCCTGGG
NONE
Target Sequence 
GTAGCTCAGGCTCATCTTTCAGCAGCATCGACAGCCTCAGACGCTCCTCAACCCTTGAGCAAGCTAGGGGGTACACATCT
CGTCCCCTAGGAGCTGTGCGGCCAAAGATGCTCCCATCTGGATGCCGACCCCTGCACACAAGCCATCCTCTGTCGGCTCC
TGTTGCTAACCGCCCCCTGTCACCCCACCTTCCTCTGAAGAAGCCACAGCTGAGTGCTACATTCTCTATCTCGCACCGTA
TATTTGGTGCTGCGTTGGGTGCTGCCATTATATCCATTCCTCTCGCCACCAAGTTCAGCCTCATGTTTGATGTCTGAGAG
AGAAATGTGGTCTGCATGATGAGAAAGAAATGCTATATTTCTGTGACTATCTCAGCATCTGAATTTGCCTTGCAATGCAA
CTGTAGCTGCCGTTGGAATAATATCTTTGCTGTGCTTGTAGACTTGTGAATAATAAACAAAACATGCAATGACCATACTC
CCTGTGAGATATGATGTTTTATGCTAAGTGTTAATTTTCTCTACCCTTTATTNGTTCTGCTGCCTTGTGGATTCCATGTT
CATTTTGTCCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis