Browse Element(s) Details


Os.50990.1.S1_at

Description gb:AK059974.1
DB_XREF= gi:32969992
TID=Os.50990.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A04, full insert sequence.
FL= gb:AK059974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4239011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42340OsAffx.6945.1.S1_at11/1110+22459247..22463635expressed protein
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42400OsAffx.30753.1.S1_at11/1110+22490090..22494225hypothetical protein
LOC_Os10g42400Os.38109.1.S1_at2/1110+22490090..22494225hypothetical protein
LOC_Os10g42404NANA10+22495316..22495540hypothetical protein
LOC_Os10g42410Os.7002.1.S1_at11/1110+22499662..22501684expressed protein
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50990.1.S1_at--1099--4151Chr10:22488997..22489021 (25 bp)
CGCCGTGCTGGATGACATGCAGGAT
LOC_Os10g42390
Os.50990.1.S1_at--106--10251Chr10:22489032..22489056 (25 bp)
TTTGTTCGCGCCAAAATTGATTTTG
LOC_Os10g42390
Os.50990.1.S1_at--900--8471Chr10:22489076..22489100 (25 bp)
TGGCTGCCTGCATTACCGTGTAAAT
LOC_Os10g42390
Os.50990.1.S1_at--435--9971Chr10:22489089..22489113 (25 bp)
TACCGTGTAAATACTCAACGACTTG
LOC_Os10g42390
Os.50990.1.S1_at--455--2071Chr10:22489109..22489133 (25 bp)
ACTTGTATCGTCCTTGTGCATTGTA
LOC_Os10g42390
Os.50990.1.S1_at--276--8751Chr10:22489130..22489154 (25 bp)
TGTACTGTCAGTATTTCCAAATTGT
LOC_Os10g42390
Os.50990.1.S1_at--114--10131Chr10:22489189..22489213 (25 bp)
TATGAGCTAGTCACCACAGCTTCAG
LOC_Os10g42390
Os.50990.1.S1_at--993--4851Chr10:22489213..22489237 (25 bp)
GCTAGCTGTTTAATTCAATTGCAAG
LOC_Os10g42390
Os.50990.1.S1_at--1035--2831Chr10:22489235..22489259 (25 bp)
AAGTCTGCAATACCTGTCAAGAAAA
LOC_Os10g42390
Os.50990.1.S1_at--483--8191Chr10:22489287..22489311 (25 bp)
GGAAGCTTTTGCAATGTTATTTTTA
LOC_Os10g42390
Os.50990.1.S1_at--770--151Chr10:22489305..22489329 (25 bp)
ATTTTTAGCCACAGAAATGGGCGGT
LOC_Os10g42390
Target Sequence 
CGCCGTGCTGGATGACATGCAGGATTTCCTTTAATTTTGTTCGCGCCAAAATTGATTTTGATTTGTTTTGTTTTGTTTGT
GGCTGCCTGCATTACCGTGTAAATACTCAACGACTTGTATCGTCCTTGTGCATTGTACTGTCAGTATTTCCAAATTGTTG
GAAATGATAATGTAGAGTATTCCAGGTAGAATTATGAGCTAGTCACCACAGCTTCAGCTAGCTGTTTAATTCAATTGCAA
GTCTGCAATACCTGTCAAGAAAATAAATCAACTGTATCAATGTATCAGTTGGAAGCTTTTGCAATGTTATTTTTAGCCAC
AGAAATGGGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis