Browse Element(s) Details


Os.51030.1.S1_at

Description gb:AK060253.1
DB_XREF= gi:32970271
TID=Os.51030.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D08, full insert sequence.
FL= gb:AK060253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3281011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein
LOC_Os11g32810Os.51030.1.S1_at11/1111+18884307..18887261expressed protein
LOC_Os11g32820OsAffx.7280.1.S1_at11/1111+18889036..18889470expressed protein
LOC_Os11g32830Os.37083.2.S1_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32830Os.47130.4.A1_x_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32840OsAffx.19132.1.S1_at11/1111+18901885..18902214hypothetical protein
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51030.1.S1_at--159--4991Chr11:18886665..18886685 (21 bp)
GCATGTATGCAACGGATCACTTTAT
LOC_Os11g32810
Os.51030.1.S1_at--9--2951Chr11:18886712..18886736 (25 bp)
AAGGCTCGAGAAACGTGAACCGCAT
LOC_Os11g32810
Os.51030.1.S1_at--628--6111Chr11:18886830..18886854 (25 bp)
GAGTGCCTCATTCTGGATCCTAGAA
LOC_Os11g32810
Os.51030.1.S1_at--907--6191Chr11:18886947..18886971 (25 bp)
GAGGCAGTTCCTTCACATGTTAAAT
LOC_Os11g32810
Os.51030.1.S1_at--727--3511Chr11:18886981..18887005 (25 bp)
CATGATTCTCAGGTGTGCGGCTATA
LOC_Os11g32810
Os.51030.1.S1_at--506--351Chr11:18887003..18887027 (25 bp)
ATAACCATTGTCTTGAACTCTCCAC
LOC_Os11g32810
Os.51030.1.S1_at--648--5471Chr11:18887017..18887041 (25 bp)
GAACTCTCCACCACATTTGAGATTG
LOC_Os11g32810
Os.51030.1.S1_at--661--6851Chr11:18887043..18887067 (25 bp)
GTTTGAGTTATGAAGCCGGCCATCT
LOC_Os11g32810
Os.51030.1.S1_at--916--6631Chr11:18887074..18887098 (25 bp)
GTTGTCGTGCTCATAGTTTTGCATT
LOC_Os11g32810
Os.51030.1.S1_at--344--6891Chr11:18887132..18887156 (25 bp)
GTATATGCTCACTTCTCACATGTAC
LOC_Os11g32810
Os.51030.1.S1_at--703--7751Chr11:18887168..18887192 (25 bp)
GGTGTTGCTAGCTTATCTCAAGCAC
LOC_Os11g32810
Target Sequence 
GCATGTATGCAACGGATCACTTTATTATCCTGGAAAGAAAACAGACTTGAGAAGGCTCGAGAAACGTGAACCGCATAAAA
ACCTCAAATTTGCGAAGATGACCGGGTTTGATGGAGAACGATCAAGCATTGAGCTTGCACTGCACATCCTGGAGAGCTCA
ACTAACCTTGAGTGCCTCATTCTGGATCCTAGAAAATATAAATCCGAGTGGAAATATATTTATGAAGAGAACTTGCGCGA
TGTTCAGTGGAGAGTACATAATTTCACTATTTCGGAATACATTGCAGAGGCAGTTCCTTCACATGTTAAATTATTGTTTT
CATGATTCTCAGGTGTGCGGCTATAACCATTGTCTTGAACTCTCCACCACATTTGAGATTGGGTTTGAGTTATGAAGCCG
GCCATCTGCTGGTGTTGTCGTGCTCATAGTTTTGCATTTATGGTGGTGCCTTTTTCTTTTGGGGAAAAAATGTATATGCT
CACTTCTCACATGTACCATTAATTCTTGGTGTTGCTAGCTTATCTCAAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis