Browse Element(s) Details


Os.5109.1.S1_at

Description gb:AU181089
DB_XREF= gi:13536867
DB_XREF=AU181089
CLONE=S11373
TID=Os.5109.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5109 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3492011/11glycosyl hydrolase family 29, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004560molecular_functionalpha-L-fucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5109.1.S1_at--411--10251Chr09:20348656..20348680 (25 bp)
TTTGAGATAGTGGTGTTACGTGGTC
LOC_Os09g34920
Os.5109.1.S1_at--98--10071Chr09:20348649..20348673 (25 bp)
TAGTGGTGTTACGTGGTCGGTCGAC
LOC_Os09g34920
Os.5109.1.S1_at--1152--9411Chr09:20348633..20348657 (25 bp)
TCGGTCGACGTCGTTGGTCGTACAA
LOC_Os09g34920
Os.5109.1.S1_at--646--10831Chr09:20348584..20348608 (25 bp)
TTGGGCGCCGGTGATGAATAGTACT
LOC_Os09g34920
Os.5109.1.S1_at--1067--5191Chr09:20348569..20348593 (25 bp)
GAATAGTACTGCCATACGTAAGACT
LOC_Os09g34920
Os.5109.1.S1_at--531--6991Chr09:20348564..20348588 (25 bp)
GTACTGCCATACGTAAGACTAGAGC
LOC_Os09g34920
Os.5109.1.S1_at--1023--2751Chr09:20348550..20348574 (25 bp)
AAGACTAGAGCCGTACAAGCCACAT
LOC_Os09g34920
Os.5109.1.S1_at--381--10031Chr09:20348545..20348569 (25 bp)
TAGAGCCGTACAAGCCACATCCGAC
LOC_Os09g34920
Os.5109.1.S1_at--391--5851Chr09:20348523..20348547 (25 bp)
GACCACCAATTGCTACACTCTAAGT
LOC_Os09g34920
Os.5109.1.S1_at--696--3171Chr09:20348517..20348541 (25 bp)
CAATTGCTACACTCTAAGTAGAGAG
LOC_Os09g34920
Os.5109.1.S1_at--448--6011Chr09:20348497..20348521 (25 bp)
GAGAGATCACACTACATGTAACTTA
LOC_Os09g34920
Target Sequence 
TTTGAGATAGTGGTGTTACGTGGTCGGTCGACGTCGTTGGTCGTACAACAACCTAACGNCGGCGCGCCTTCATTGGGCGC
CGGTGATGAATAGTACTGCCATACGTAAGACTAGAGCCGTACAAGCCACATCCGACCACCAATTGCTACACTCTAAGTAG
AGAGATCACACTACATGTAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis