Browse Element(s) Details


Os.51135.1.S1_at

Description gb:AK061077.1
DB_XREF= gi:32971095
TID=Os.51135.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-E08, full insert sequence.
FL= gb:AK061077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3893011/11tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006388biological_processtRNA splicing
GO:0000214cellular_componenttRNA-intron endonuclease complex
GO:0000213molecular_functiontRNA-intron endonuclease activity
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51135.1.S1_at--135--911Chr11:22676920..22676944 (25 bp)
AGGCTTACTCGCATCTGAGATTTAA
LOC_Os11g38930
Os.51135.1.S1_at--355--7331Chr11:22676977..22677001 (25 bp)
GTGCAGATTTTGTGTCTTACCGTCA
LOC_Os11g38930
Os.51135.1.S1_at--190--5111Chr11:22677009..22677033 (25 bp)
GCACTCGTTCACTCAGAATTTGCGG
LOC_Os11g38930
Os.51135.1.S1_at--39--2771Chr11:22677135..22677159 (25 bp)
AAGACATTGCTTGTTCTGACCATCA
LOC_Os11g38930
Os.51135.1.S1_at--1159--3551Chr11:22677155..22677179 (25 bp)
CATCAGCAGCGGCAGTTGCGAACTG
LOC_Os11g38930
Os.51135.1.S1_at--278--6251Chr11:22677232..22677256 (25 bp)
GATGGATACCGCAACAGTGCCGTGA
LOC_Os11g38930
Os.51135.1.S1_at--791--2131Chr11:22677245..22677269 (25 bp)
ACAGTGCCGTGAACAGCGGTCTGAA
LOC_Os11g38930
Os.51135.1.S1_at--697--331Chr11:22677345..22677369 (25 bp)
ATACTTGGCTTCAGTGTTCTATCTA
LOC_Os11g38930
Os.51135.1.S1_at--302--10571Chr11:22677361..22677385 (25 bp)
TTCTATCTAGCTTGCTTGTATACAA
LOC_Os11g38930
Os.51135.1.S1_at--600--10011Chr11:22677409..22677433 (25 bp)
TAGCATTTCTATGTACTGCGGAGAT
LOC_Os11g38930
Os.51135.1.S1_at--1087--6452Chr11:22677431..22677455 (25 bp)
GATACTAGTTTTGATCCAGTTGCAA
LOC_Os11g38930
Target Sequence 
AGGCTTACTCGCATCTGAGATTTAAGAACTGGGTGGTGAGATCAGGGTTGCAGTATGGTGCAGATTTTGTGTCTTACCGT
CACCATCCAGCACTCGTTCACTCAGAATTTGCGGTGGTTGTGGTTCCAGAAGGCGCAGCGTTTGGCAATAGGTGTGGTCG
TATGGAGGTGTGGTCTGATCTACTATGTGCTCTCCGGGCTTCTGGCAGTGTAGCCAAGACATTGCTTGTTCTGACCATCA
GCAGCGGCAGTTGCGAACTGAGCTCCCCAGATTGCTTAGAACAGCTTGTTGTTCACGAGAGAACAATCACTAGATGGATA
CCGCAACAGTGCCGTGAACAGCGGTCTGAAGCAAGCAGAGATGAAGCCAATAGGGAAGAACTGATTAGCAAAAAGGAAAG
TGTAGAGTTCAACCTCTGGGGTGTGATACTTGGCTTCAGTGTTCTATCTAGCTTGCTTGTATACAAGCTGAAATTCAGAC
AATGAAGCTTAGCATTTCTATGTACTGCGGAGATACTAGTTTTGATCCAGTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis