Browse Element(s) Details


Os.51166.1.S1_at

Description gb:AK061248.1
DB_XREF= gi:32971266
TID=Os.51166.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E12, full insert sequence.
FL= gb:AK061248.1 gb:AK103339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2806011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein
LOC_Os04g28090Os.10202.1.S1_at11/114+16392525..16399790Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g28100OsAffx.3925.1.S1_at11/114+16403115..16406446U-box domain containing protein, expressed
LOC_Os04g28100OsAffx.23801.2.S1_s_at1/114+16403115..16406446U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51166.1.S1_at--642--3771Chr04:16382991..16383015 (25 bp)
CTCTGAGATCGTTGGAGCTTCTTAG
LOC_Os04g28060
Os.51166.1.S1_at--402--6831Chr04:16382777..16382801 (25 bp)
GTTTACTAAAGAGTGCCGCCCTATT
LOC_Os04g28060
Os.51166.1.S1_at--774--4191Chr04:16382762..16382786 (25 bp)
CCGCCCTATTAAGCTCTTTGCTAAG
LOC_Os04g28060
Os.51166.1.S1_at--834--5011Chr04:16382101..16382125 (25 bp)
GCAGGTTGCGTTGCTTAAAACTCGA
LOC_Os04g28060
Os.51166.1.S1_at--1144--6751Chr04:16382076..16382100 (25 bp)
GTTAATATTGCTTGCGGTACACCAA
LOC_Os04g28060
Os.51166.1.S1_at--501--5391Chr04:16380738..16380762 (25 bp)
GAAGCATTATCTCTGTCACGGGTGA
LOC_Os04g28060
Os.51166.1.S1_at--87--191Chr04:16380676..16380700 (25 bp)
ATTTACCTTATTCACGTTGCCACAA
LOC_Os04g28060
Os.51166.1.S1_at--715--7111Chr04:16380558..16380580 (23 bp)
GTCAGCAACGAGTTCTGGGACTTAT
LOC_Os04g28060
Os.51166.1.S1_at--962--10391Chr04:16380537..16380561 (25 bp)
TTATACAAGGGCTATCTCGATCAGA
LOC_Os04g28060
Os.51166.1.S1_at--99--751Chr04:16380487..16380511 (25 bp)
ATGTTTTTATGGTGCTGTCTCTGAG
LOC_Os04g28060
Os.51166.1.S1_at--920--2651Chr04:16380449..16380473 (25 bp)
AAGCCCTTCCATCTGCGGAGTAAAA
LOC_Os04g28060
Target Sequence 
CTCTGAGATCGTTGGAGCTTCTTAGGGGTTTAAAGATGTTTACTAAAGAGTGCCGCCCTATTAAGCTCTTTGCTAAGCAC
ATGAAAGTGGAGGAGCAGGTTGCGTTGCTTAAAACTCGAGTTAATATTGCTTGCGGTACACCAAGCAGGATCAAGAAGCT
AATTGACATGGAAGCATTATCTCTGTCACGGGTGAAACTAGTTGTACTTGACATGCAGAGAGATGCAAAGTCATTTACCT
TATTCACGTTGCCACAAGTCAGCAACGAGTTCTGGGACTTATACAAGGGCTATCTCGATCAGAAAGTTCGAGGAGGAGAT
ACAAGATTATGTTTTTATGGTGCTGTCTCTGAGAAAGATGTGAAAAAAGCCCTTCCATCTGCGGAGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis