Browse Element(s) Details


Os.51191.1.S1_x_at

Description gb:AK061476.1
DB_XREF= gi:32971494
TID=Os.51191.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F06, full insert sequence.
FL= gb:AK061476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2613011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51191.1.S1_x_at--768--5231Chr01:14783290..14783311 (22 bp)
GAATAGCTCTCTTCAAGTATGTTCA
LOC_Os01g26130
Os.51191.1.S1_x_at--1091--2811Chr01:14783311..14783335 (25 bp)
AAGTAGGCTAGCGTGAAGGTTCTCA
LOC_Os01g26130
Os.51191.1.S1_x_at--1139--8531Chr01:14783369..14783393 (25 bp)
TGGAGGTGCCCTTGGCGTTGACCAA
LOC_Os01g26130
Os.51191.1.S1_x_at--412--5991Chr01:14783413..14783437 (25 bp)
GAGACATCCTCATTCTTTGAGACTC
LOC_Os01g26130
Os.51191.1.S1_x_at--511--3431Chr01:14783447..14783471 (25 bp)
CAGAGTTCCCGGTCAGGACATGGAT
LOC_Os01g26130
Os.51191.1.S1_x_at--455--7391Chr01:14784032..14784056 (25 bp)
GTGTGTATTTGTGTCCTTAACCTTT
LOC_Os01g26130
Os.51191.1.S1_x_at--924--6551Chr01:14784084..14784108 (25 bp)
GATTCTAGACTTTATGGCCTTTCTG
LOC_Os01g26130
Os.51191.1.S1_x_at--125--7632Chr01:14784142..14784166 (25 bp)
GGGACCATCACCAGTTCAAAGCTAC
LOC_Os01g26130
Os.51191.1.S1_x_at--392--9911Chr01:14784164..14784188 (25 bp)
TACTGACAGTGCTCTTTGTAGTGGT
LOC_Os01g26130
Os.51191.1.S1_x_at--875--7491Chr01:14784184..14784208 (25 bp)
GTGGTTCCAGACGTTACCATTGTAT
LOC_Os01g26130
Os.51191.1.S1_x_at--1152--8991Chr01:14784342..14784366 (25 bp)
TGAATGGCTCTGCTTTTTGTAAGTG
LOC_Os01g26130
Target Sequence 
GAATAGCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGACCAAGACGAGGAAGGTGCCTGT
GCTGGAGGTGCCCTTGGCGTTGACCAAGATCAAGAAGGCAAATCTTGAGACATCCTCATTCTTTGAGACTCTTAGAGGGA
CAGAGTTCCCGGTCAGGACATGGATGCGCATCTTTGTGAAGAAAGAGGATTGAGAATGGTGTGTATTTGTGTCCTTAACC
TTTAAGGGGAGACTCATGAAAGAAGAAAAAGATTCTAGACTTTATGGCCTTTCTGTCCCCTCAATTTCTGCCATTGTTTG
GATGCCATGGGACCATCACCAGTTCAAAGCTACTGACAGTGCTCTTTGTAGTGGTTCCAGACGTTACCATTGTATATATG
TATCTATTTACATGTCTAACTTGATGCTTATAGAGATTATATTTGTTGTTTATGTATTTTTTTTGCGAGTTATTCCCATA
TCAAACTAATTTAGTTGCGACTTTGGAGTTGCTGGTATAGTAGAGAATTGAATGGCTCTGCTTTTTGTAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51191.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis