Browse Element(s) Details

Os.51208.1.S1_s_at

Description

gb:AK061607.1
DB_XREF= gi:32971625
TID=Os.51208.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G03, full insert sequence.
FL= gb:AK061607.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g57020	11/11	expressed protein
LOC_Os01g01050	1/11	R3H domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g56930	Os.7078.1.S1_at	11/11	2	+	34894566..34895380	expressed protein
LOC_Os02g56940	NA	NA	2	+	34895801..34897381	expressed protein
LOC_Os02g56950	Os.52320.1.S1_at	9/11	2	+	34898357..34904943	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950	OsAffx.3091.1.S1_at	6/11	2	+	34898357..34904943	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960	Os.57452.1.S1_x_at	11/11	2	+	34905178..34907616	60S ribosomal protein L23, putative, expressed
LOC_Os02g56960	Os.12109.1.S1_at	11/11	2	+	34905178..34907616	60S ribosomal protein L23, putative, expressed
LOC_Os02g56960	OsAffx.27834.1.S1_at	1/11	2	+	34905178..34907616	60S ribosomal protein L23, putative, expressed
LOC_Os02g56970	Os.56323.1.S1_at	11/11	2	+	34907845..34909606	glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980	OsAffx.24902.1.S1_s_at	11/11	2	+	34909928..34912117	nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990	Os.8300.1.S1_at	11/11	2	+	34912253..34914009	60S ribosomal protein L37, putative, expressed
LOC_Os02g56990	Os.8300.1.S1_s_at	10/11	2	+	34912253..34914009	60S ribosomal protein L37, putative, expressed
LOC_Os02g57000	Os.55773.1.S1_at	11/11	2	+	34914673..34915867	C2 domain containing protein, expressed
LOC_Os02g57010	Os.52459.1.S1_at	11/11	2	+	34916635..34918940	29 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010	Os.32596.1.S1_x_at	1/11	2	+	34916635..34918940	29 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020	Os.51208.1.S1_s_at	11/11	2	+	34919502..34920398	expressed protein
LOC_Os02g57030	OsAffx.12677.1.S1_at	11/11	2	+	34920772..34923516	expressed protein
LOC_Os02g57030	Os.5432.1.A1_at	10/11	2	+	34920772..34923516	expressed protein
LOC_Os02g57030	Os.28544.2.S1_x_at	1/11	2	+	34920772..34923516	expressed protein
LOC_Os02g57040	Os.407.1.S1_at	11/11	2	+	34924454..34928296	Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050	Os.18150.1.S1_at	11/11	2	+	34928691..34931108	diphthamide synthesis protein, putative, expressed
LOC_Os02g57060	Os.9385.1.S1_at	11/11	2	+	34932239..34935532	D1 protease precursor, putative, expressed
LOC_Os02g57070	Os.54808.1.S1_at	11/11	2	+	34935197..34938206	3'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070	Os.11168.1.S1_at	1/11	2	+	34935197..34938206	3'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080	Os.52783.1.A1_x_at	11/11	2	+	34939213..34946140	protein kinase family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009543	cellular_component	thylakoid lumen (sensu Viridiplantae)

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51208.1.S1_s_at--116--605	1	Chr02:34920065..34920089 (25 bp)	GAGATCACTCTGCTGCTGCATGCGT	LOC_Os02g57020
Os.51208.1.S1_s_at--111--39	1	Chr02:34920068..34920092 (25 bp)	ATCACTCTGCTGCTGCATGCGTAGT	LOC_Os02g57020
Os.51208.1.S1_s_at--784--477	1	Chr02:34920076..34920100 (25 bp)	GCTGCTGCATGCGTAGTGCTCTGTA	LOC_Os02g57020
Os.51208.1.S1_s_at--103--385	1	Chr02:34920080..34920104 (25 bp)	CTGCATGCGTAGTGCTCTGTAGTTT	LOC_Os02g57020
Os.51208.1.S1_s_at--370--403	1	Chr02:34920087..34920111 (25 bp)	CGTAGTGCTCTGTAGTTTAGGCCAT	LOC_Os02g57020
Os.51208.1.S1_s_at--852--731	1	Chr02:34920091..34920115 (25 bp)	GTGCTCTGTAGTTTAGGCCATGGAT	LOC_Os02g57020
Os.51208.1.S1_s_at--946--377	2	Chr02:34920094..34920118 (25 bp)	CTCTGTAGTTTAGGCCATGGATGGT	LOC_Os02g57020
Os.51208.1.S1_s_at--534--843	2	Chr02:34920106..34920130 (25 bp)	GGCCATGGATGGTTTCAGACTTTCA	LOC_Os02g57020
Os.51208.1.S1_s_at--928--341	2	Chr05:13289429..13289448 (20 bp)	CAGACTTTCAGTGAAGAGCTTAACT	NONE
Os.51208.1.S1_s_at--80--913	1	Chr02:34920159..34920183 (25 bp)	TGCTGATGACTCTGTGGGTGTAAAT	LOC_Os02g57020
Os.51208.1.S1_s_at--691--959	1	Chr02:34920190..34920214 (25 bp)	TCATAGAGTGATGGATCATGGTGGT	LOC_Os02g57020

Target Sequence

GAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAAC
TGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis