Browse Element(s) Details


Os.5131.1.S1_at

Description gb:AK107914.1
DB_XREF= gi:32993123
TID=Os.5131.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G09, full insert sequence.
FL= gb:AK107914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0231011/11LOC496359 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02330Os.30518.1.S1_at11/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02330Os.2528.1.S1_x_at1/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02340NANA3+797203..799457hypothetical protein
LOC_Os03g02350NANA3+800595..806750transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5131.1.S1_at--223--4271Chr03:776025..776049 (25 bp)
CCGGCCAAGTTCCAGAAGAGCTTTT
LOC_Os03g02310
Os.5131.1.S1_at--530--2811Chr03:775822..775846 (25 bp)
AAGATAGCCTGTGTTGTGTCCCAAG
LOC_Os03g02310
Os.5131.1.S1_at--1088--2951Chr03:774124..774145 (22 bp)
AATGGCCAGCTATCTTCAAGTCAAC
LOC_Os03g02310
Os.5131.1.S1_at--600--711Chr03:774022..774046 (25 bp)
ATGATGATCTGCCACCGCTTGAGGC
LOC_Os03g02310
Os.5131.1.S1_at--231--5851Chr03:773980..774004 (25 bp)
GACCATTTGAACTGTATGCCGACTC
LOC_Os03g02310
Os.5131.1.S1_at--566--1111Chr03:773951..773975 (25 bp)
AGTGATTCTGACTCTTAGACTAGTT
LOC_Os03g02310
Os.5131.1.S1_at--368--6831Chr03:773929..773953 (25 bp)
GTTTACATTTGAACACGCCATTGAT
LOC_Os03g02310
Os.5131.1.S1_at--504--331Chr03:773880..773904 (25 bp)
ATACACCCGGTGTACTTATGGTCAA
LOC_Os03g02310
Os.5131.1.S1_at--359--7831Chr03:773861..773885 (25 bp)
GGTCAAGTCTTACATTCTGCCAAAA
LOC_Os03g02310
Os.5131.1.S1_at--178--6711Chr03:773807..773831 (25 bp)
GTTCGATGTCATTCAGTAGCAGGCA
LOC_Os03g02310
Os.5131.1.S1_at--218--6951Chr03:773792..773816 (25 bp)
GTAGCAGGCACAAGGCCTTTCACTT
LOC_Os03g02310
Target Sequence 
CCGGCCAAGTTCCAGAAGAGCTTTTGGATCAAGAATGGGAATTTTGTGGTTGTGGATGCTAGTGGCCGGGATCAGGCGCT
CGAATCAGGGAGCAAGATAGCCTGTGTTGTGTCCCAAGTCCTCTTCCATGACCAAGTCCGGGCTATGGAGAAATCTGAGG
AATGGCCAGCTATCTTCAAGTCAACTTCTAAGGAAGGTTCAGAAGCTGGAACACAAGAAGGAACAAGGCCACAGATTGAG
GAGGAACCGGATTCTGATGAAGATGATGATCTGCCACCGCTTGAGGCGAACACGAATAGACAAAGACCATTTGAACTGTA
TGCCGACTCAGAGAGTGATTCTGACTCTTAGACTAGTTTACATTTGAACACGCCATTGATGATGTTGTGGTTTGTGATGG
AAAAATACACCCGGTGTACTTATGGTCAAGTCTTACATTCTGCCAAAAACTGCTGAGTGTCAAAATATTCTGAAGAAGTT
CGATGTCATTCAGTAGCAGGCACAAGGCCTTTCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis