Browse Element(s) Details


Os.51318.1.S1_x_at

Description gb:AK062519.1
DB_XREF= gi:32972537
TID=Os.51318.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C11, full insert sequence.
FL= gb:AK062519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g411101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein
LOC_Os01g41110OsAffx.23616.1.S1_at11/111+23606880..23607718hypothetical protein
LOC_Os01g41110Os.51318.1.S1_x_at1/111+23606880..23607718hypothetical protein
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51318.1.S1_x_at--441--1331Chr02:24126296..24126320 (25 bp)
AGAGGAGCCATAGGCAAAGCCCGAG
NONE
Os.51318.1.S1_x_at--438--3611Chr02:24126348..24126372 (25 bp)
CTTACCGGGCGGTGAGCTTGGTAGA
NONE
Os.51318.1.S1_x_at--433--3551Chr02:24126449..24126473 (25 bp)
CATCGGTCAACGCTCGCGCATCACT
NONE
Os.51318.1.S1_x_at--249--4631Chr02:24126621..24126645 (25 bp)
GCGAGGTCGATGAACACGGCGACAT
NONE
Os.51318.1.S1_x_at--1053--7791Chr02:24126625..24126649 (25 bp)
GGTCGATGAACACGGCGACATCCTT
NONE
Os.51318.1.S1_x_at--774--671Chr02:24126630..24126654 (25 bp)
ATGAACACGGCGACATCCTTCTCAT
NONE
Os.51318.1.S1_x_at--813--9231Chr02:24126693..24126717 (25 bp)
TCCATCTCGCTTGGCCTGCGAGAGA
NONE
Os.51318.1.S1_x_at--693--2111Chr02:24126765..24126789 (25 bp)
ACATGGGCCCCAACAATTTTATTAT
NONE
Os.51318.1.S1_x_at--383--3512Chr02:24126766..24126790 (25 bp)
CATGGGCCCCAACAATTTTATTATT
NONE
Os.51318.1.S1_x_at--904--10312Chr12:24937973..24937993 (21 bp)
TTTCAGATTGAATTACCACGTAAGC
NONE
Os.51318.1.S1_x_at--458--10733Chr12:24937976..24937995 (20 bp)
TTGAATTACCACGTAAGCGCCGCGT
NONE
Target Sequence 
AGAGGAGCCATAGGCAAAGCCCGAGGGGTGAGCCTCCTCCCTCTCCGCCCCCCTTACCGGGCGGTGAGCTTGGTAGAGCC
AGAGCCGAGGGGGCAGGGATCTGAGAGGGAATGGAGAGGGAGAAGCGGCCGCTTCCCACGACTCCTTTCCTCCCATCGGT
CAACGCTCGCGCATCACTCCTCTCTCGCCAGCCACTGCGCGCCACTTCTCTCCCACCGGCCACTGTCCGCGACTCCTTTC
CTGCTGGCCGCCGCTCGCGTCTCCTTTCCTACCCGTGGCTCCTCTCTTCCTGCCGGCCGGCGCTTGCATCTCCTCTCCCG
CCCCGGCGAGGTCGATGAACACGGCGACATCCTTCTCATCCACCCGACCTGCTGCTCTACCTGCGGCCTGCCGCCGCTCC
ATCTCGCTTGGCCTGCGAGAGAGAGAGGATAGAGAGAAGAGTGGAGTAGTGAGGATGACATGTGGGGACACATGGGCCCC
AACAATTTTATTATTTTTTGTGTGAAACTGACATGTGGGTCCCGTGGGTTTTATTATTTTTTCAGATTGAATTACCACGT
AAGCGCCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51318.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis