Browse Element(s) Details


Os.51339.1.S1_at

Description gb:AK062593.1
DB_XREF= gi:32972611
TID=Os.51339.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H04, full insert sequence.
FL= gb:AK062593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2212011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22090OsAffx.13916.1.S1_at11/114+12482724..12488200NB-ARC domain containing protein, expressed
LOC_Os04g22100OsAffx.3853.1.S1_at11/114+12493787..12496380BED zinc finger family protein, expressed
LOC_Os04g22110Os.47999.3.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22110OsAffx.8338.1.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22120Os.51339.1.S1_at11/114+12509573..12514925Protein kinase domain containing protein, expressed
LOC_Os04g22130OsAffx.3854.1.S1_at11/114+12521196..12521447hypothetical protein
LOC_Os04g22140OsAffx.13917.1.S1_x_at11/114+12521672..12522585hypothetical protein
LOC_Os04g22140OsAffx.13917.1.S1_at11/114+12521672..12522585hypothetical protein
LOC_Os04g22140OsAffx.29544.1.S1_x_at1/114+12521672..12522585hypothetical protein
LOC_Os04g22150OsAffx.13918.1.S1_at11/114+12524867..12525867hypothetical protein
LOC_Os04g22160Os.26886.1.S1_x_at8/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22160Os.26886.3.S1_x_at5/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22160OsAffx.16244.1.S1_x_at1/114+12528528..12531543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22170NANA4+12534618..12535520transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g22180Os.26886.6.S1_s_at9/114+12535770..12537516hypothetical protein
LOC_Os04g22180Os.26886.2.S1_s_at8/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.16467.1.S1_at3/114+12535770..12537516hypothetical protein
LOC_Os04g22180OsAffx.3425.1.S1_at1/114+12535770..12537516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51339.1.S1_at--787--7391Chr04:12510058..12510082 (25 bp)
GTGATGATGATCAGTCGTCGCTCGA
LOC_Os04g22120
Os.51339.1.S1_at--873--591Chr04:12509861..12509885 (25 bp)
ATGCCGGTGGCAGTGTACCTGCAGC
LOC_Os04g22120
Os.51339.1.S1_at--786--4691Chr04:12509831..12509855 (25 bp)
GCGGCTTCCACCATGAAGTACTACG
LOC_Os04g22120
Os.51339.1.S1_at--104--2851Chr04:12509816..12509840 (25 bp)
AAGTACTACGGCGACAGCATGACCT
LOC_Os04g22120
Os.51339.1.S1_at--587--2151Chr04:12509803..12509827 (25 bp)
ACAGCATGACCTCCGTTGGGTCGGA
LOC_Os04g22120
Os.51339.1.S1_at--724--6151Chr04:12509780..12509804 (25 bp)
GAGGTTGTTGGTTACTCGTCGACCA
LOC_Os04g22120
Os.51339.1.S1_at--560--491Chr04:12509715..12509739 (25 bp)
ATCGGCCATGGCTAACAATGACAGC
LOC_Os04g22120
Os.51339.1.S1_at--439--6611Chr04:12509652..12509676 (25 bp)
GTTGGTCAGTTGGTACTGCCGTACT
LOC_Os04g22120
Os.51339.1.S1_at--211--4251Chr04:12509634..12509658 (25 bp)
CCGTACTGGTAGATGGCACATGGTA
LOC_Os04g22120
Os.51339.1.S1_at--260--7951Chr04:12509603..12509627 (25 bp)
GGATATACTCCCATGTTGCAATAAC
LOC_Os04g22120
Os.51339.1.S1_at--443--351Chr04:12509583..12509607 (25 bp)
ATAACTCATTCCAATCTGCTTGTAA
LOC_Os04g22120
Target Sequence 
GTGATGATGATCAGTCGTCGCTCGACGCCATCGCCGACACACGGCTCGGCGGCGCGTTCGACCGGTGGGAGATGGAGCGT
GTGGTGGGCGTCGGGCTGTGGTGCGCGCACCCCGACCCGAAGGCGCGGCCGGCGATCAGGCAGGCGGCGGAGGCGTTGCA
GTCGAGGAAGTTCAGGATGCCGGTGCTGCCGCCGAGGATGCCGGTGGCAGTGTACCTGCAGCCGTTCGCGGCTTCCACCA
TGAAGTACTACGGCGACAGCATGACCTCCGTTGGGTCGGAGGTTGTTGGTTACTCGTCGACCAGCCTTGCGACGGCGACG
CTGTCGTCCAGCTCTAGCTTGCCATCGGCCATGGCTAACAATGACAGCTTGAGCCCAAGAGAATGAGGGTTTTGGTTATA
TTAGAAGTTGGTCAGTTGGTACTGCCGTACTGGTAGATGGCACATGGTAGATAAAGGATATACTCCCATGTTGCAATAAC
TCATTCCAATCTGCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis