Browse Element(s) Details


Os.51364.1.A1_at

Description gb:AK062647.1
DB_XREF= gi:32972665
TID=Os.51364.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E03, full insert sequence.
FL= gb:AK062647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3658011/11expressed protein
LOC_Os02g368202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein
LOC_Os08g36620OsAffx.22848.3.S1_x_at3/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_at2/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_x_at1/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51364.1.A1_at--428--3032Chr02:22205039..22205059 (21 bp)
AATGCCTCCAAGCATACCATCGTGA
NONE
Os.51364.1.A1_at--469--311Chr08:22948031..22948055 (25 bp)
ATACCATCGTGATGCCGCCTGCGAG
LOC_Os08g36580
Os.51364.1.A1_at--152--4511Chr08:22947895..22947919 (25 bp)
GCCGATGCTGCTTGGGCCAACTATG
LOC_Os08g36580
Os.51364.1.A1_at--546--9051Chr08:22947855..22947879 (25 bp)
TGCAGTCAAGGCCATGTTCTCATAG
LOC_Os08g36580
Os.51364.1.A1_at--778--731Chr08:22947842..22947866 (25 bp)
ATGTTCTCATAGACCTCTTGGCCGC
LOC_Os08g36580
Os.51364.1.A1_at--814--4071Chr08:22947771..22947795 (25 bp)
CGAGCGGCACATGACGTCGGAGATC
LOC_Os08g36580
Os.51364.1.A1_at--391--4092Chr02:22205363..22205387 (25 bp)
CGACCATGCGCTTGCGGTGGCGATC
LOC_Os02g36820
Os.51364.1.A1_at--113--9392Chr02:22205386..22205410 (25 bp)
TCGATCCCCTCGTCGATTAGGATAA
LOC_Os02g36820
Os.51364.1.A1_at--519--10572Chr10:12003267..12003519 (25 bp)
TTCTTTCAGCTTGGTTACTGGCAGC
NONE
Os.51364.1.A1_at--774--10291Chr08:22947538..22947562 (25 bp)
TTTCCTATTTTTCTGTGTCGATTGC
LOC_Os08g36580
Os.51364.1.A1_at--820--7451Chr08:22947524..22947548 (25 bp)
GTGTCGATTGCATCACGGCCCTACA
LOC_Os08g36580
Target Sequence 
AATGCCTCCAAGCATACCATCGTGATGCCGCCTGCGAGCTCGGCGCCCATAGCATCCGCGGCCGTCTCCTCCGCCGGTGA
GCCATCGATGGTGAAGGAGCGGCTCCGCGTGCTGGGCCACCTCGTTCCCGGATGCCGGAAGCTCCCCGCGCCGATGCTGC
TTGGGCCAACTATGTGGCCGCGCTGGAGATGCAGTCAAGGCCATGTTCTCATAGACCTCTTGGCCGCCACCGCCGNNNNN
GCGTGCGACAGGGGACGCCGCGTCNAACGGGCAGCGAGCGGCACATGACGTCGGAGATCGAGCAGTACCGCCGCAGCGAC
GGCGGTGGGGCGGCGCGACCATGCGCTTGCGGTGGCGATCGATCCCCTCGTCGATTAGGATAATGAGAAGCTAATACACA
AAGCCATTTTGATTTCTTTCAGCTTGGTTACTGGCAGCAATCNATTTGGTTGGTTGCCTTGTTGATCAATCGGAGAAGGA
GGTGAAGGTCGCCGGCGTATCGCTATCTTTCCTATTTTTCTGTGTCGATTGCATCACGGCCCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51364.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis