Browse Element(s) Details


Os.51496.1.S1_at

Description gb:AK062949.1
DB_XREF= gi:32972967
TID=Os.51496.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-C06, full insert sequence.
FL= gb:AK062949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0358011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03530Os.45976.1.S1_at5/117+1408025..1411299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03530Os.45976.1.S1_x_at2/117+1408025..1411299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03540OsAffx.20823.2.S1_at5/117+1412465..1413393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03540OsAffx.20823.2.S1_x_at5/117+1412465..1413393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03550Os.43567.1.S1_x_at4/117+1416654..1417272transposon protein, putative, unclassified
LOC_Os07g03550Os.29987.1.S1_at4/117+1416654..1417272transposon protein, putative, unclassified
LOC_Os07g03550Os.38172.1.S1_x_at1/117+1416654..1417272transposon protein, putative, unclassified
LOC_Os07g03560OsAffx.22848.3.S1_x_at2/117+1419611..1425741retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03570Os.43567.1.S1_x_at6/117+1426561..1427396transposon protein, putative, unclassified
LOC_Os07g03570Os.29987.1.S1_at4/117+1426561..1427396transposon protein, putative, unclassified
LOC_Os07g03570Os.38172.1.S1_x_at3/117+1426561..1427396transposon protein, putative, unclassified
LOC_Os07g03580Os.51496.1.S1_at11/117+1430983..1431703SCP-like extracellular protein, expressed
LOC_Os07g03590Os.51641.1.S1_at11/117+1435591..1436446Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03590Os.51641.1.S1_x_at11/117+1435591..1436446Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03600OsAffx.16067.1.S1_at11/117+1442638..1443195SCP-like extracellular protein, expressed
LOC_Os07g03610NANA7+1447528..1448040SCP-like extracellular protein, expressed
LOC_Os07g03620NANA7+1450255..1450731SCP-like extracellular protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51496.1.S1_at--276--4631Chr07:1431273..1431297 (25 bp)
GCGATCTCCGGCACACGTCGGGCAG
LOC_Os07g03580
Os.51496.1.S1_at--834--3931Chr07:1431348..1431372 (25 bp)
CGGCGGACGCGGTTGGCTTGTGGAT
LOC_Os07g03580
Os.51496.1.S1_at--1078--8371Chr07:1431506..1431530 (25 bp)
GGCGATGTCCTCATCAGCTGCAACT
LOC_Os07g03580
Os.51496.1.S1_at--753--2571Chr07:1431554..1431578 (25 bp)
AACGAGCGCCCGTACTAGCTAGTAG
LOC_Os07g03580
Os.51496.1.S1_at--575--4551Chr07:1431559..1431583 (25 bp)
GCGCCCGTACTAGCTAGTAGAATTA
LOC_Os07g03580
Os.51496.1.S1_at--1067--6931Chr07:1431592..1431616 (25 bp)
GTAGATGCATGTACGTTAGGCGCGC
LOC_Os07g03580
Os.51496.1.S1_at--1090--4991Chr07:1431598..1431622 (25 bp)
GCATGTACGTTAGGCGCGCATCAGA
LOC_Os07g03580
Os.51496.1.S1_at--598--4031Chr07:1431605..1431629 (25 bp)
CGTTAGGCGCGCATCAGATATCTAT
LOC_Os07g03580
Os.51496.1.S1_at--1060--8391Chr07:1431610..1431634 (25 bp)
GGCGCGCATCAGATATCTATATGTA
LOC_Os07g03580
Os.51496.1.S1_at--959--9831Chr07:1431640..1431664 (25 bp)
TACAGAATACAGTACGTTATTCGTA
LOC_Os07g03580
Os.51496.1.S1_at--1133--3831Chr07:1431654..1431678 (25 bp)
CGTTATTCGTACTTAAGGAGTACAT
LOC_Os07g03580
Target Sequence 
GCGATCTCCGGCACACGTCGGGCAGCGGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGTGGTCGGCGGCG
GACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCAGCAACACCTGCACCAAAGGGGCGCTGCTCGA
CTGCGGCCACTACACGCAGATCGTGTGGCGGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATG
TCCTCATCAGCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAATTAATACTGGAG
TAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATACAGAATACAGTACGTTATTCGTACTTAAGGA
GTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis