Browse Element(s) Details


Os.51605.1.S1_at

Description gb:AK063154.1
DB_XREF= gi:32973172
TID=Os.51605.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H10, full insert sequence.
FL= gb:AK063154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g040299/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed
LOC_Os07g04050OsAffx.22502.2.S1_at11/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.5967.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050OsAffx.22502.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.53420.1.S1_x_at2/117+1714160..1715080hypothetical protein
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein
LOC_Os07g04070OsAffx.5199.1.S1_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04070OsAffx.5199.1.S1_x_at11/117+1721014..1721718hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51605.1.S1_at--331--7351Chr07:1700130..1700154 (25 bp)
GTGCAAATCTGCATCATCCCATCCA
NONE
Os.51605.1.S1_at--694--1511Chr07:1700098..1700122 (25 bp)
AGCAGCCATGGCTCTGGTCAAGCTC
NONE
Os.51605.1.S1_at--890--10071Chr07:1700036..1700060 (25 bp)
TAGTGGTCCGCCATTGCTTGCTGCA
LOC_Os07g04029
Os.51605.1.S1_at--1062--7771Chr07:1700007..1700031 (25 bp)
GGTCCAATCATCACAAAACTTTTCT
LOC_Os07g04029
Os.51605.1.S1_at--1126--9231Chr07:1699933..1699957 (25 bp)
TCCTTCAATCCTCCCTATGAATGAG
LOC_Os07g04029
Os.51605.1.S1_at--539--2551Chr07:1699878..1699902 (25 bp)
AACTGTTGGTTGTCAATTCGTGGAA
LOC_Os07g04029
Os.51605.1.S1_at--333--10351Chr07:1699844..1699868 (25 bp)
TTTTAGCTGGTTTCGTGCAATGTTA
LOC_Os07g04029
Os.51605.1.S1_at--1045--9811Chr07:1699818..1699842 (25 bp)
TAGAAAGTCATCGTTTTTTACCTGT
LOC_Os07g04029
Os.51605.1.S1_at--385--391Chr07:1699702..1699726 (25 bp)
ATCAGCATTTTGTGGACACGCGCCT
LOC_Os07g04029
Os.51605.1.S1_at--196--7531Chr07:1699691..1699715 (25 bp)
GTGGACACGCGCCTTTTCTTCAAGT
LOC_Os07g04029
Os.51605.1.S1_at--760--6011Chr07:1699654..1699678 (25 bp)
GAGAGTGTTTCCTAGGCTTTATCCT
LOC_Os07g04029
Target Sequence 
GTGCAAATCTGCATCATCCCATCCACCGGGCTAGCAGCCATGGCTCTGGTCAAGCTCTCTCTCTCTGCCTCCCTGGCCTG
GCCTCCTGCTTTTCTAGTGGTCCGCCATTGCTTGCTGCAGAAAGGTCCAATCATCACAAAACTTTTCTTATTCTACCTTT
CTATTTTTTTTTCTTTTAATTTCTTTGTCAATGCATTTCCTTCAATCCTCCCTATGAATGAGCAAGTTAACAAAACCAGT
CGGTTTTCGTGAAACTGTTGGTTGTCAATTCGTGGAAATCGATTAGTTTTAGCTGGTTTCGTGCAATGTTAATAGAAAGT
CATCGTTTTTTACCTGTTTTTAGTTGGTTTTGATAAACCGGAAGGGAGCGGTTTTCACTTTGGAAACTGAAAGGTAAACC
CTGGATAGGAGTACTAACTTGTTGTATAATCAGCATTTTGTGGACACGCGCCTTTTCTTCAAGTACACCAACAATTGAGA
GTGTTTCCTAGGCTTTATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis