Browse Element(s) Details


Os.51611.1.S1_at

Description gb:AK063174.1
DB_XREF= gi:32973192
TID=Os.51611.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-A04, full insert sequence.
FL= gb:AK063174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51611.1.S1_at--1161--4951Chr04:31343850..31343874 (25 bp)
GCATACACCTAGTACGAATCATCAG
LOC_Os04g52990
Os.51611.1.S1_at--857--9591Chr04:31343832..31343856 (25 bp)
TCATCAGAGTCCATAGGCTTACCTT
LOC_Os04g52990
Os.51611.1.S1_at--43--10471Chr04:31343814..31343838 (25 bp)
TTACCTTTTGTGACCATTTGCTCGT
LOC_Os04g52990
Os.51611.1.S1_at--252--5411Chr04:31343743..31343767 (25 bp)
GAAGCTCCTCAGTTATCGGTTAGAC
LOC_Os04g52990
Os.51611.1.S1_at--146--10631Chr04:31343716..31343740 (25 bp)
TTCGTCGAACGTATTGTGCGCGCGC
LOC_Os04g52990
Os.51611.1.S1_at--114--3371Chr04:31343666..31343690 (25 bp)
CACCGCGCGCATAGGCAAGCAGAGG
LOC_Os04g52990
Os.51611.1.S1_at--200--6551Chr04:31343518..31343542 (25 bp)
GATTTTCTACACGTGGAGGCGAGCC
LOC_Os04g52990
Os.51611.1.S1_at--861--891Chr04:31343502..31343526 (25 bp)
AGGCGAGCCAGCTTGTGCTGCCATG
LOC_Os04g52990
Os.51611.1.S1_at--245--611Chr04:31343480..31343504 (25 bp)
ATGCCCACCCATATGCTGGTTGGAG
LOC_Os04g52990
Os.51611.1.S1_at--899--5631Chr04:31343456..31343480 (25 bp)
GACTTGGACGACTAAATGGCAGACA
LOC_Os04g52990
Os.51611.1.S1_at--861--751Chr04:31343360..31343384 (25 bp)
ATGTCACGGGTATTTCGCTGTGTCA
LOC_Os04g52990
Target Sequence 
GCATACACCTAGTACGAATCATCAGAGTCCATAGGCTTACCTTTTGTGACCATTTGCTCGTCAAGCTCCGTGCTGATGGA
GTGATGGACGGCGAGATGATGGAGAGAGAAGCTCCTCAGTTATCGGTTAGACATTTCGTCGAACGTATTGTGCGCGCGCC
GTGGCGTGCGTTGAGGCCTTCCGCCACCGCGCGCATAGGCAAGCAGAGGGGTGCGTGGCCGCCGCCGGAGATGGAGCTCG
GAGATGCGCGCCGCCTCTTCGGCGGCCCCCGGCGGCGGGCAGGCATGAGGCATCGCATCGAGGGACGAGGGCTTGCGCAG
GGTGAGACGGAGGATTTTCTACACGTGGAGGCGAGCCAGCTTGTGCTGCCATGCCCACCCATATGCTGGTTGGAGACTTG
GACGACTAAATGGCAGACAATCATAGCAGAACACTGACGGAAAGGCCAAACCCGTTGGTTATAAACCAATTATTAATTGT
GCCAATTTGAATGTCACGGGTATTTCGCTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis