Browse Element(s) Details


Os.51720.1.S1_at

Description gb:AK063525.1
DB_XREF= gi:32973543
TID=Os.51720.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A04, full insert sequence.
FL= gb:AK063525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0150011/11pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01440Os.27378.1.A1_at5/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01440Os.50281.1.S1_at1/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01450Os.53110.1.S1_at11/112+265795..268839expressed protein
LOC_Os02g01460NANA2+269817..271352retrotransposon protein, putative, unclassified
LOC_Os02g01470NANA2+271926..273503retrotransposon protein, putative, unclassified
LOC_Os02g01480Os.50997.1.A1_x_at11/112+274455..277257expressed protein
LOC_Os02g01480Os.54334.1.S1_at10/112+274455..277257expressed protein
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51720.1.S1_at--1020--6911Chr02:293240..293264 (25 bp)
GTAGACGGCCAGTATGAGTTTGGTT
LOC_Os02g01500
Os.51720.1.S1_at--839--6791Chr02:293300..293410 (25 bp)
GTTATTGATGGTGCTATCGGCGCAG
LOC_Os02g01500
Os.51720.1.S1_at--655--7311Chr02:293396..293420 (25 bp)
GTGCTATCGGCGCAGAATTTCTGAA
LOC_Os02g01500
Os.51720.1.S1_at--4--3291Chr02:293480..293504 (25 bp)
CAAAACTATTCTTCTCATGTGCTCG
LOC_Os02g01500
Os.51720.1.S1_at--850--9511Chr02:293492..293516 (25 bp)
TCTCATGTGCTCGAATAACGCAGAG
LOC_Os02g01500
Os.51720.1.S1_at--853--9791Chr02:293507..293531 (25 bp)
TAACGCAGAGTGGTGCTATCTCATT
LOC_Os02g01500
Os.51720.1.S1_at--70--1111Chr02:293515..293539 (25 bp)
AGTGGTGCTATCTCATTTTGTATAA
LOC_Os02g01500
Os.51720.1.S1_at--107--171Chr02:293529..293553 (25 bp)
ATTTTGTATAATACCGGCACGGTGT
LOC_Os02g01500
Os.51720.1.S1_at--62--7431Chr02:293550..293574 (25 bp)
GTGTTCTGTCAAGGAGGACCCGAAA
LOC_Os02g01500
Os.51720.1.S1_at--700--8011Chr02:293687..293711 (25 bp)
GGAGGATCAACTTACAAGCATTTTT
LOC_Os02g01500
Os.51720.1.S1_at--358--4231Chr02:293768..293792 (25 bp)
CCGGGAAACAATGCAGTATAGCCTG
LOC_Os02g01500
Target Sequence 
GTAGACGGCCAGTATGAGTTTGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGGTGCTATCGG
CGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCCAAACTCAATGTTACTGTGAAGTTAAAGATCAGCAAAAC
TATTCTTCTCATGTGCTCGAATAACGCAGAGTGGTGCTATCTCATTTTGTATAATACCGGCACGGTGTTCTGTCAAGGAG
GACCCGAAAACCAAGAGCACATAACCATAGNCAGAATGACCTGGTTTTTGGATTAAAAGCTTTTTCTGNTTATCTTTTTT
TTTTTTNGNTTGNTTGNTTCGNTCCAGNTATAGNGGGAANTAGGAGGATCAACTTACAAGCATTTTTAGCACCNTTTTGN
GGGNTTACCCTCGGCAAGNGTGATAACTGGAGAGAGTAAATTCCCGGGAAACAATGCAGTATAGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis